Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
HDDC3Q8N4P3 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC19■□□□□ 0.63
HDDC3Q8N4P3 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
HDDC3Q8N4P3 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
HDDC3Q8N4P3 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
HDDC3Q8N4P3 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
HDDC3Q8N4P3 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
HDDC3Q8N4P3 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC19■□□□□ 0.63
HDDC3Q8N4P3 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
HDDC3Q8N4P3 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC19■□□□□ 0.63
HDDC3Q8N4P3 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
HDDC3Q8N4P3 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
HDDC3Q8N4P3 AC073130.3-201ENST00000624389 2278 ntBASIC18.99■□□□□ 0.63
HDDC3Q8N4P3 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC18.99■□□□□ 0.63
HDDC3Q8N4P3 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
HDDC3Q8N4P3 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
HDDC3Q8N4P3 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC18.99■□□□□ 0.63
HDDC3Q8N4P3 GPAT2P1-201ENST00000444924 1672 ntBASIC18.99■□□□□ 0.63
HDDC3Q8N4P3 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
HDDC3Q8N4P3 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC18.99■□□□□ 0.63
HDDC3Q8N4P3 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
HDDC3Q8N4P3 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC18.99■□□□□ 0.63
HDDC3Q8N4P3 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
HDDC3Q8N4P3 GAD2-202ENST00000376248 680 ntTSL 5 BASIC18.99■□□□□ 0.63
HDDC3Q8N4P3 KRT18P38-201ENST00000449496 1282 ntBASIC18.99■□□□□ 0.63
HDDC3Q8N4P3 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC18.99■□□□□ 0.63
HDDC3Q8N4P3 GCSHP2-201ENST00000560971 527 ntBASIC18.99■□□□□ 0.63
HDDC3Q8N4P3 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC18.99■□□□□ 0.63
HDDC3Q8N4P3 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC18.99■□□□□ 0.63
HDDC3Q8N4P3 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC18.99■□□□□ 0.63
HDDC3Q8N4P3 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
HDDC3Q8N4P3 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
HDDC3Q8N4P3 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC18.98■□□□□ 0.63
HDDC3Q8N4P3 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
HDDC3Q8N4P3 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC18.98■□□□□ 0.63
HDDC3Q8N4P3 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC18.98■□□□□ 0.63
HDDC3Q8N4P3 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC18.98■□□□□ 0.63
HDDC3Q8N4P3 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC18.98■□□□□ 0.63
HDDC3Q8N4P3 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
HDDC3Q8N4P3 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
HDDC3Q8N4P3 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC18.98■□□□□ 0.63
HDDC3Q8N4P3 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
HDDC3Q8N4P3 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC18.98■□□□□ 0.63
HDDC3Q8N4P3 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC18.98■□□□□ 0.63
HDDC3Q8N4P3 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC18.98■□□□□ 0.63
HDDC3Q8N4P3 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
HDDC3Q8N4P3 SNX5-210ENST00000481323 562 ntTSL 3 BASIC18.98■□□□□ 0.63
HDDC3Q8N4P3 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
HDDC3Q8N4P3 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC18.98■□□□□ 0.63
HDDC3Q8N4P3 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC18.98■□□□□ 0.63
HDDC3Q8N4P3 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC18.98■□□□□ 0.63
HDDC3Q8N4P3 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
HDDC3Q8N4P3 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC18.98■□□□□ 0.63
HDDC3Q8N4P3 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
HDDC3Q8N4P3 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
HDDC3Q8N4P3 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC18.98■□□□□ 0.63
HDDC3Q8N4P3 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
HDDC3Q8N4P3 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
HDDC3Q8N4P3 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC18.97■□□□□ 0.63
HDDC3Q8N4P3 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC18.97■□□□□ 0.63
HDDC3Q8N4P3 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
HDDC3Q8N4P3 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
HDDC3Q8N4P3 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
HDDC3Q8N4P3 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
HDDC3Q8N4P3 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
HDDC3Q8N4P3 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
HDDC3Q8N4P3 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC18.97■□□□□ 0.63
HDDC3Q8N4P3 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
HDDC3Q8N4P3 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
HDDC3Q8N4P3 ILF2-202ENST00000368681 726 ntTSL 2 BASIC18.97■□□□□ 0.63
HDDC3Q8N4P3 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
HDDC3Q8N4P3 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
HDDC3Q8N4P3 AL023284.2-201ENST00000405850 579 ntBASIC18.97■□□□□ 0.63
HDDC3Q8N4P3 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC18.97■□□□□ 0.63
HDDC3Q8N4P3 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC18.97■□□□□ 0.63
HDDC3Q8N4P3 AL136038.3-201ENST00000561909 1096 ntBASIC18.97■□□□□ 0.63
HDDC3Q8N4P3 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
HDDC3Q8N4P3 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
HDDC3Q8N4P3 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
HDDC3Q8N4P3 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC18.97■□□□□ 0.63
HDDC3Q8N4P3 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
HDDC3Q8N4P3 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
HDDC3Q8N4P3 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
HDDC3Q8N4P3 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC18.97■□□□□ 0.63
HDDC3Q8N4P3 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC18.97■□□□□ 0.63
HDDC3Q8N4P3 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
HDDC3Q8N4P3 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
HDDC3Q8N4P3 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC18.96■□□□□ 0.63
HDDC3Q8N4P3 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC18.96■□□□□ 0.63
HDDC3Q8N4P3 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC18.96■□□□□ 0.63
HDDC3Q8N4P3 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
HDDC3Q8N4P3 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC18.96■□□□□ 0.63
HDDC3Q8N4P3 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
HDDC3Q8N4P3 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
HDDC3Q8N4P3 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
HDDC3Q8N4P3 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
HDDC3Q8N4P3 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
HDDC3Q8N4P3 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC18.96■□□□□ 0.63
HDDC3Q8N4P3 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC18.96■□□□□ 0.63
HDDC3Q8N4P3 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 48.2 ms