Protein–RNA interactions for Protein: Q7Z407

CSMD3, CUB and sushi domain-containing protein 3, humanhuman

Predictions only

Length 3,707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3Q7Z407 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
CSMD3Q7Z407 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC13.16□□□□□ -0.3
CSMD3Q7Z407 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
CSMD3Q7Z407 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC13.16□□□□□ -0.3
CSMD3Q7Z407 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC13.16□□□□□ -0.3
CSMD3Q7Z407 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
CSMD3Q7Z407 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
CSMD3Q7Z407 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
CSMD3Q7Z407 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
CSMD3Q7Z407 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
CSMD3Q7Z407 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
CSMD3Q7Z407 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC13.16□□□□□ -0.3
CSMD3Q7Z407 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
CSMD3Q7Z407 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
CSMD3Q7Z407 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
CSMD3Q7Z407 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC13.16□□□□□ -0.3
CSMD3Q7Z407 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC13.16□□□□□ -0.3
CSMD3Q7Z407 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
CSMD3Q7Z407 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC13.16□□□□□ -0.3
CSMD3Q7Z407 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
CSMD3Q7Z407 PIN1-206ENST00000587625 878 ntTSL 2 BASIC13.16□□□□□ -0.3
CSMD3Q7Z407 MIR7706-201ENST00000613747 67 ntBASIC13.16□□□□□ -0.3
CSMD3Q7Z407 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC13.16□□□□□ -0.3
CSMD3Q7Z407 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
CSMD3Q7Z407 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC13.16□□□□□ -0.3
CSMD3Q7Z407 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC13.16□□□□□ -0.3
CSMD3Q7Z407 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
CSMD3Q7Z407 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
CSMD3Q7Z407 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC13.15□□□□□ -0.3
CSMD3Q7Z407 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
CSMD3Q7Z407 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC13.15□□□□□ -0.3
CSMD3Q7Z407 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC13.15□□□□□ -0.3
CSMD3Q7Z407 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC13.15□□□□□ -0.3
CSMD3Q7Z407 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC13.15□□□□□ -0.3
CSMD3Q7Z407 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC13.15□□□□□ -0.3
CSMD3Q7Z407 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC13.15□□□□□ -0.3
CSMD3Q7Z407 FICD-205ENST00000552758 603 ntTSL 2 BASIC13.15□□□□□ -0.3
CSMD3Q7Z407 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC13.15□□□□□ -0.3
CSMD3Q7Z407 AL121772.3-201ENST00000610840 674 ntBASIC13.15□□□□□ -0.3
CSMD3Q7Z407 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC13.15□□□□□ -0.3
CSMD3Q7Z407 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC13.15□□□□□ -0.3
CSMD3Q7Z407 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC13.15□□□□□ -0.3
CSMD3Q7Z407 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
CSMD3Q7Z407 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC13.15□□□□□ -0.3
CSMD3Q7Z407 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
CSMD3Q7Z407 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
CSMD3Q7Z407 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
CSMD3Q7Z407 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
CSMD3Q7Z407 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC13.15□□□□□ -0.3
CSMD3Q7Z407 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
CSMD3Q7Z407 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC13.15□□□□□ -0.3
CSMD3Q7Z407 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
CSMD3Q7Z407 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC13.15□□□□□ -0.3
CSMD3Q7Z407 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC13.15□□□□□ -0.3
CSMD3Q7Z407 CDV3-207ENST00000508481 661 ntTSL 3 BASIC13.15□□□□□ -0.3
CSMD3Q7Z407 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC13.15□□□□□ -0.3
CSMD3Q7Z407 POLD2P1-201ENST00000511220 997 ntBASIC13.15□□□□□ -0.3
CSMD3Q7Z407 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC13.15□□□□□ -0.3
CSMD3Q7Z407 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC13.15□□□□□ -0.3
CSMD3Q7Z407 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC13.15□□□□□ -0.3
CSMD3Q7Z407 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC13.15□□□□□ -0.3
CSMD3Q7Z407 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CSMD3Q7Z407 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CSMD3Q7Z407 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC13.14□□□□□ -0.31
CSMD3Q7Z407 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC13.14□□□□□ -0.31
CSMD3Q7Z407 PMS2P2-201ENST00000425039 1128 ntBASIC13.14□□□□□ -0.31
CSMD3Q7Z407 KRT18P58-201ENST00000527480 1120 ntBASIC13.14□□□□□ -0.31
CSMD3Q7Z407 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC13.14□□□□□ -0.31
CSMD3Q7Z407 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC13.14□□□□□ -0.31
CSMD3Q7Z407 AL157384.1-201ENST00000445995 2473 ntBASIC13.14□□□□□ -0.31
CSMD3Q7Z407 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
CSMD3Q7Z407 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CSMD3Q7Z407 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
CSMD3Q7Z407 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CSMD3Q7Z407 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CSMD3Q7Z407 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CSMD3Q7Z407 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CSMD3Q7Z407 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
CSMD3Q7Z407 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
CSMD3Q7Z407 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC13.14□□□□□ -0.31
CSMD3Q7Z407 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC13.14□□□□□ -0.31
CSMD3Q7Z407 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC13.14□□□□□ -0.31
CSMD3Q7Z407 CCNC-219ENST00000627680 896 ntTSL 5 BASIC13.14□□□□□ -0.31
CSMD3Q7Z407 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
CSMD3Q7Z407 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC13.14□□□□□ -0.31
CSMD3Q7Z407 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CSMD3Q7Z407 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
CSMD3Q7Z407 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CSMD3Q7Z407 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CSMD3Q7Z407 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC13.14□□□□□ -0.31
CSMD3Q7Z407 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC13.14□□□□□ -0.31
CSMD3Q7Z407 NAA38-203ENST00000575071 553 ntTSL 2 BASIC13.14□□□□□ -0.31
CSMD3Q7Z407 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC13.14□□□□□ -0.31
CSMD3Q7Z407 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
CSMD3Q7Z407 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CSMD3Q7Z407 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CSMD3Q7Z407 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
CSMD3Q7Z407 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
CSMD3Q7Z407 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC13.14□□□□□ -0.31
CSMD3Q7Z407 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms