Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PTCHD3Q3KNS1 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PTCHD3Q3KNS1 USP39-202ENST00000409025 1946 ntTSL 5 BASIC18.51■□□□□ 0.55
PTCHD3Q3KNS1 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
PTCHD3Q3KNS1 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
PTCHD3Q3KNS1 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PTCHD3Q3KNS1 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC18.51■□□□□ 0.55
PTCHD3Q3KNS1 AL390955.1-201ENST00000428694 934 ntBASIC18.51■□□□□ 0.55
PTCHD3Q3KNS1 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC18.51■□□□□ 0.55
PTCHD3Q3KNS1 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PTCHD3Q3KNS1 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC18.51■□□□□ 0.55
PTCHD3Q3KNS1 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
PTCHD3Q3KNS1 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC18.51■□□□□ 0.55
PTCHD3Q3KNS1 AL031985.4-201ENST00000642138 673 ntBASIC18.51■□□□□ 0.55
PTCHD3Q3KNS1 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
PTCHD3Q3KNS1 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC18.51■□□□□ 0.55
PTCHD3Q3KNS1 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PTCHD3Q3KNS1 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC18.51■□□□□ 0.55
PTCHD3Q3KNS1 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
PTCHD3Q3KNS1 RCC2P6-201ENST00000526625 1557 ntBASIC18.51■□□□□ 0.55
PTCHD3Q3KNS1 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
PTCHD3Q3KNS1 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
PTCHD3Q3KNS1 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
PTCHD3Q3KNS1 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
PTCHD3Q3KNS1 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC18.5■□□□□ 0.55
PTCHD3Q3KNS1 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
PTCHD3Q3KNS1 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
PTCHD3Q3KNS1 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
PTCHD3Q3KNS1 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
PTCHD3Q3KNS1 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
PTCHD3Q3KNS1 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
PTCHD3Q3KNS1 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC18.5■□□□□ 0.55
PTCHD3Q3KNS1 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC18.5■□□□□ 0.55
PTCHD3Q3KNS1 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
PTCHD3Q3KNS1 FAM210CP-201ENST00000445714 574 ntBASIC18.5■□□□□ 0.55
PTCHD3Q3KNS1 AC116562.2-201ENST00000507042 360 ntBASIC18.5■□□□□ 0.55
PTCHD3Q3KNS1 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC18.5■□□□□ 0.55
PTCHD3Q3KNS1 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC18.5■□□□□ 0.55
PTCHD3Q3KNS1 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
PTCHD3Q3KNS1 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
PTCHD3Q3KNS1 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
PTCHD3Q3KNS1 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC18.5■□□□□ 0.55
PTCHD3Q3KNS1 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
PTCHD3Q3KNS1 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
PTCHD3Q3KNS1 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
PTCHD3Q3KNS1 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC18.5■□□□□ 0.55
PTCHD3Q3KNS1 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC18.5■□□□□ 0.55
PTCHD3Q3KNS1 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
PTCHD3Q3KNS1 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PTCHD3Q3KNS1 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC18.49■□□□□ 0.55
PTCHD3Q3KNS1 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC18.49■□□□□ 0.55
PTCHD3Q3KNS1 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
PTCHD3Q3KNS1 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
PTCHD3Q3KNS1 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
PTCHD3Q3KNS1 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
PTCHD3Q3KNS1 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
PTCHD3Q3KNS1 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
PTCHD3Q3KNS1 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC18.49■□□□□ 0.55
PTCHD3Q3KNS1 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
PTCHD3Q3KNS1 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC18.49■□□□□ 0.55
PTCHD3Q3KNS1 DERL1-203ENST00000419562 918 ntTSL 2 BASIC18.49■□□□□ 0.55
PTCHD3Q3KNS1 AC091390.4-202ENST00000476426 537 ntBASIC18.49■□□□□ 0.55
PTCHD3Q3KNS1 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC18.49■□□□□ 0.55
PTCHD3Q3KNS1 AC026271.3-201ENST00000571884 352 ntBASIC18.49■□□□□ 0.55
PTCHD3Q3KNS1 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PTCHD3Q3KNS1 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC18.49■□□□□ 0.55
PTCHD3Q3KNS1 AC097493.4-201ENST00000641197 219 ntBASIC18.49■□□□□ 0.55
PTCHD3Q3KNS1 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PTCHD3Q3KNS1 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
PTCHD3Q3KNS1 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PTCHD3Q3KNS1 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC18.49■□□□□ 0.55
PTCHD3Q3KNS1 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC18.49■□□□□ 0.55
PTCHD3Q3KNS1 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PTCHD3Q3KNS1 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC18.49■□□□□ 0.55
PTCHD3Q3KNS1 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC18.49■□□□□ 0.55
PTCHD3Q3KNS1 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PTCHD3Q3KNS1 KRT8P11-201ENST00000409686 1436 ntBASIC18.49■□□□□ 0.55
PTCHD3Q3KNS1 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
PTCHD3Q3KNS1 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
PTCHD3Q3KNS1 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
PTCHD3Q3KNS1 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
PTCHD3Q3KNS1 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
PTCHD3Q3KNS1 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
PTCHD3Q3KNS1 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
PTCHD3Q3KNS1 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
PTCHD3Q3KNS1 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
PTCHD3Q3KNS1 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC18.48■□□□□ 0.55
PTCHD3Q3KNS1 AC004951.3-201ENST00000418645 1148 ntBASIC18.48■□□□□ 0.55
PTCHD3Q3KNS1 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC18.48■□□□□ 0.55
PTCHD3Q3KNS1 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC18.48■□□□□ 0.55
PTCHD3Q3KNS1 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
PTCHD3Q3KNS1 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
PTCHD3Q3KNS1 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC18.48■□□□□ 0.55
PTCHD3Q3KNS1 AC012306.2-201ENST00000609350 630 ntBASIC18.48■□□□□ 0.55
PTCHD3Q3KNS1 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
PTCHD3Q3KNS1 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
PTCHD3Q3KNS1 CROCCP3-202ENST00000420820 1947 ntBASIC18.48■□□□□ 0.55
PTCHD3Q3KNS1 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
PTCHD3Q3KNS1 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
PTCHD3Q3KNS1 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 18.2 ms