Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC20.25■□□□□ 0.83
VCPP55072 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
VCPP55072 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC20.25■□□□□ 0.83
VCPP55072 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC20.25■□□□□ 0.83
VCPP55072 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
VCPP55072 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
VCPP55072 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
VCPP55072 HMGA1P5-201ENST00000412453 271 ntBASIC20.25■□□□□ 0.83
VCPP55072 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
VCPP55072 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC20.25■□□□□ 0.83
VCPP55072 IRF5-214ENST00000613821 595 ntTSL 5 BASIC20.25■□□□□ 0.83
VCPP55072 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
VCPP55072 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
VCPP55072 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC20.25■□□□□ 0.83
VCPP55072 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
VCPP55072 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC20.25■□□□□ 0.83
VCPP55072 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
VCPP55072 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
VCPP55072 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
VCPP55072 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
VCPP55072 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
VCPP55072 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
VCPP55072 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
VCPP55072 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
VCPP55072 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
VCPP55072 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
VCPP55072 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC20.24■□□□□ 0.83
VCPP55072 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
VCPP55072 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
VCPP55072 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
VCPP55072 BET1L-202ENST00000332865 533 ntTSL 5 BASIC20.24■□□□□ 0.83
VCPP55072 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC20.24■□□□□ 0.83
VCPP55072 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC20.24■□□□□ 0.83
VCPP55072 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC20.24■□□□□ 0.83
VCPP55072 AP000347.1-202ENST00000435868 847 ntBASIC20.24■□□□□ 0.83
VCPP55072 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC20.24■□□□□ 0.83
VCPP55072 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
VCPP55072 AC097488.1-201ENST00000507834 756 ntBASIC20.24■□□□□ 0.83
VCPP55072 KRT18P16-201ENST00000510337 1294 ntBASIC20.24■□□□□ 0.83
VCPP55072 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC20.24■□□□□ 0.83
VCPP55072 ABBA01031674.1-201ENST00000635145 728 ntBASIC20.24■□□□□ 0.83
VCPP55072 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
VCPP55072 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
VCPP55072 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC20.23■□□□□ 0.83
VCPP55072 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
VCPP55072 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
VCPP55072 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
VCPP55072 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
VCPP55072 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
VCPP55072 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
VCPP55072 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
VCPP55072 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC20.23■□□□□ 0.83
VCPP55072 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
VCPP55072 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC20.23■□□□□ 0.83
VCPP55072 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC20.23■□□□□ 0.83
VCPP55072 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC20.23■□□□□ 0.83
VCPP55072 CD70-202ENST00000423145 881 ntTSL 2 BASIC20.23■□□□□ 0.83
VCPP55072 TUBB8P6-201ENST00000436895 1288 ntBASIC20.23■□□□□ 0.83
VCPP55072 B3GAT3P1-201ENST00000471720 806 ntBASIC20.23■□□□□ 0.83
VCPP55072 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
VCPP55072 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
VCPP55072 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC20.23■□□□□ 0.83
VCPP55072 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC20.23■□□□□ 0.83
VCPP55072 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC20.23■□□□□ 0.83
VCPP55072 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC20.23■□□□□ 0.83
VCPP55072 DGCR10-201ENST00000609839 495 ntBASIC20.23■□□□□ 0.83
VCPP55072 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC20.23■□□□□ 0.83
VCPP55072 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC20.23■□□□□ 0.83
VCPP55072 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
VCPP55072 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
VCPP55072 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
VCPP55072 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
VCPP55072 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
VCPP55072 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
VCPP55072 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC20.22■□□□□ 0.83
VCPP55072 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
VCPP55072 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC20.22■□□□□ 0.83
VCPP55072 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
VCPP55072 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
VCPP55072 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
VCPP55072 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
VCPP55072 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC20.22■□□□□ 0.83
VCPP55072 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
VCPP55072 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC20.22■□□□□ 0.83
VCPP55072 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
VCPP55072 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
VCPP55072 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC20.22■□□□□ 0.83
VCPP55072 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC20.22■□□□□ 0.83
VCPP55072 PVRIG2P-201ENST00000435460 978 ntBASIC20.22■□□□□ 0.83
VCPP55072 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC20.22■□□□□ 0.83
VCPP55072 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
VCPP55072 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
VCPP55072 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC20.22■□□□□ 0.83
VCPP55072 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC20.22■□□□□ 0.83
VCPP55072 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC20.22■□□□□ 0.83
VCPP55072 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
VCPP55072 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC20.22■□□□□ 0.83
VCPP55072 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
VCPP55072 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
VCPP55072 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 61.2 ms