Protein–RNA interactions for Protein: A0A0B4J248

TRAV1-1, T-cell receptor alpha variable 1-1 (Fragment), humanhuman

Predictions only

Length 108 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-1A0A0B4J248 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
TRAV1-1A0A0B4J248 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
TRAV1-1A0A0B4J248 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC14.81□□□□□ -0.04
TRAV1-1A0A0B4J248 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
TRAV1-1A0A0B4J248 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC14.8□□□□□ -0.04
TRAV1-1A0A0B4J248 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
TRAV1-1A0A0B4J248 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
TRAV1-1A0A0B4J248 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC14.8□□□□□ -0.04
TRAV1-1A0A0B4J248 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
TRAV1-1A0A0B4J248 AC093677.2-201ENST00000600169 1863 ntBASIC14.8□□□□□ -0.04
TRAV1-1A0A0B4J248 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
TRAV1-1A0A0B4J248 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC14.8□□□□□ -0.04
TRAV1-1A0A0B4J248 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
TRAV1-1A0A0B4J248 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC14.8□□□□□ -0.04
TRAV1-1A0A0B4J248 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC14.8□□□□□ -0.04
TRAV1-1A0A0B4J248 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
TRAV1-1A0A0B4J248 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC14.8□□□□□ -0.04
TRAV1-1A0A0B4J248 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
TRAV1-1A0A0B4J248 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
TRAV1-1A0A0B4J248 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC14.8□□□□□ -0.04
TRAV1-1A0A0B4J248 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC14.8□□□□□ -0.04
TRAV1-1A0A0B4J248 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC14.8□□□□□ -0.04
TRAV1-1A0A0B4J248 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
TRAV1-1A0A0B4J248 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC14.8□□□□□ -0.04
TRAV1-1A0A0B4J248 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
TRAV1-1A0A0B4J248 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
TRAV1-1A0A0B4J248 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
TRAV1-1A0A0B4J248 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
TRAV1-1A0A0B4J248 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
TRAV1-1A0A0B4J248 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
TRAV1-1A0A0B4J248 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
TRAV1-1A0A0B4J248 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
TRAV1-1A0A0B4J248 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
TRAV1-1A0A0B4J248 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
TRAV1-1A0A0B4J248 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
TRAV1-1A0A0B4J248 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC14.8□□□□□ -0.04
TRAV1-1A0A0B4J248 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC14.8□□□□□ -0.04
TRAV1-1A0A0B4J248 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC14.79□□□□□ -0.04
TRAV1-1A0A0B4J248 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
TRAV1-1A0A0B4J248 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
TRAV1-1A0A0B4J248 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
TRAV1-1A0A0B4J248 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC14.79□□□□□ -0.04
TRAV1-1A0A0B4J248 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
TRAV1-1A0A0B4J248 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
TRAV1-1A0A0B4J248 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
TRAV1-1A0A0B4J248 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC14.79□□□□□ -0.04
TRAV1-1A0A0B4J248 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC14.79□□□□□ -0.04
TRAV1-1A0A0B4J248 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC14.79□□□□□ -0.04
TRAV1-1A0A0B4J248 CALM3-202ENST00000391918 702 ntTSL 2 BASIC14.79□□□□□ -0.04
TRAV1-1A0A0B4J248 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC14.79□□□□□ -0.04
TRAV1-1A0A0B4J248 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
TRAV1-1A0A0B4J248 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
TRAV1-1A0A0B4J248 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
TRAV1-1A0A0B4J248 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
TRAV1-1A0A0B4J248 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC14.79□□□□□ -0.04
TRAV1-1A0A0B4J248 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC14.79□□□□□ -0.04
TRAV1-1A0A0B4J248 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
TRAV1-1A0A0B4J248 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
TRAV1-1A0A0B4J248 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
TRAV1-1A0A0B4J248 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
TRAV1-1A0A0B4J248 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
TRAV1-1A0A0B4J248 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
TRAV1-1A0A0B4J248 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
TRAV1-1A0A0B4J248 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
TRAV1-1A0A0B4J248 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC14.78□□□□□ -0.04
TRAV1-1A0A0B4J248 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
TRAV1-1A0A0B4J248 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC14.78□□□□□ -0.04
TRAV1-1A0A0B4J248 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
TRAV1-1A0A0B4J248 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC14.78□□□□□ -0.04
TRAV1-1A0A0B4J248 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
TRAV1-1A0A0B4J248 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
TRAV1-1A0A0B4J248 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
TRAV1-1A0A0B4J248 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
TRAV1-1A0A0B4J248 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC14.78□□□□□ -0.04
TRAV1-1A0A0B4J248 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC14.78□□□□□ -0.04
TRAV1-1A0A0B4J248 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
TRAV1-1A0A0B4J248 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC14.78□□□□□ -0.04
TRAV1-1A0A0B4J248 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
TRAV1-1A0A0B4J248 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
TRAV1-1A0A0B4J248 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
TRAV1-1A0A0B4J248 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC14.78□□□□□ -0.04
TRAV1-1A0A0B4J248 MAG-206ENST00000597035 542 ntTSL 4 BASIC14.78□□□□□ -0.04
TRAV1-1A0A0B4J248 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC14.78□□□□□ -0.04
TRAV1-1A0A0B4J248 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
TRAV1-1A0A0B4J248 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC14.78□□□□□ -0.04
TRAV1-1A0A0B4J248 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC14.78□□□□□ -0.04
TRAV1-1A0A0B4J248 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC14.78□□□□□ -0.04
TRAV1-1A0A0B4J248 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
TRAV1-1A0A0B4J248 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
TRAV1-1A0A0B4J248 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC14.78□□□□□ -0.04
TRAV1-1A0A0B4J248 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
TRAV1-1A0A0B4J248 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
TRAV1-1A0A0B4J248 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
TRAV1-1A0A0B4J248 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
TRAV1-1A0A0B4J248 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
TRAV1-1A0A0B4J248 FLYWCH1P1-201ENST00000460917 1874 ntBASIC14.78□□□□□ -0.04
TRAV1-1A0A0B4J248 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
TRAV1-1A0A0B4J248 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC14.78□□□□□ -0.04
TRAV1-1A0A0B4J248 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
TRAV1-1A0A0B4J248 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC14.77□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms