Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC19.35■□□□□ 0.69
SHROOM3Q8TF72 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC19.35■□□□□ 0.69
SHROOM3Q8TF72 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
SHROOM3Q8TF72 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SHROOM3Q8TF72 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SHROOM3Q8TF72 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SHROOM3Q8TF72 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC19.34■□□□□ 0.69
SHROOM3Q8TF72 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
SHROOM3Q8TF72 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SHROOM3Q8TF72 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC19.34■□□□□ 0.69
SHROOM3Q8TF72 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SHROOM3Q8TF72 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SHROOM3Q8TF72 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SHROOM3Q8TF72 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SHROOM3Q8TF72 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC19.34■□□□□ 0.69
SHROOM3Q8TF72 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC19.34■□□□□ 0.69
SHROOM3Q8TF72 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC19.34■□□□□ 0.69
SHROOM3Q8TF72 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC19.34■□□□□ 0.69
SHROOM3Q8TF72 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SHROOM3Q8TF72 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
SHROOM3Q8TF72 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
SHROOM3Q8TF72 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
SHROOM3Q8TF72 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC19.33■□□□□ 0.69
SHROOM3Q8TF72 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
SHROOM3Q8TF72 TPM1-226ENST00000560959 925 ntTSL 2 BASIC19.33■□□□□ 0.69
SHROOM3Q8TF72 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
SHROOM3Q8TF72 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
SHROOM3Q8TF72 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
SHROOM3Q8TF72 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
SHROOM3Q8TF72 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
SHROOM3Q8TF72 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC19.33■□□□□ 0.69
SHROOM3Q8TF72 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC19.33■□□□□ 0.69
SHROOM3Q8TF72 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
SHROOM3Q8TF72 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC19.33■□□□□ 0.68
SHROOM3Q8TF72 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC19.33■□□□□ 0.68
SHROOM3Q8TF72 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC19.33■□□□□ 0.68
SHROOM3Q8TF72 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC19.33■□□□□ 0.68
SHROOM3Q8TF72 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC19.33■□□□□ 0.68
SHROOM3Q8TF72 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
SHROOM3Q8TF72 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
SHROOM3Q8TF72 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC19.33■□□□□ 0.68
SHROOM3Q8TF72 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SHROOM3Q8TF72 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC19.32■□□□□ 0.68
SHROOM3Q8TF72 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
SHROOM3Q8TF72 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SHROOM3Q8TF72 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC19.32■□□□□ 0.68
SHROOM3Q8TF72 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC19.32■□□□□ 0.68
SHROOM3Q8TF72 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC19.32■□□□□ 0.68
SHROOM3Q8TF72 CKBP1-201ENST00000565489 1086 ntBASIC19.32■□□□□ 0.68
SHROOM3Q8TF72 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC19.32■□□□□ 0.68
SHROOM3Q8TF72 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC19.32■□□□□ 0.68
SHROOM3Q8TF72 KRT8P45-201ENST00000414328 1447 ntBASIC19.32■□□□□ 0.68
SHROOM3Q8TF72 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SHROOM3Q8TF72 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
SHROOM3Q8TF72 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SHROOM3Q8TF72 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SHROOM3Q8TF72 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC19.32■□□□□ 0.68
SHROOM3Q8TF72 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SHROOM3Q8TF72 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SHROOM3Q8TF72 PRR31-201ENST00000371629 978 ntTSL 2 BASIC19.32■□□□□ 0.68
SHROOM3Q8TF72 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC19.32■□□□□ 0.68
SHROOM3Q8TF72 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC19.32■□□□□ 0.68
SHROOM3Q8TF72 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC19.32■□□□□ 0.68
SHROOM3Q8TF72 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC19.32■□□□□ 0.68
SHROOM3Q8TF72 AP000692.2-201ENST00000608391 879 ntBASIC19.32■□□□□ 0.68
SHROOM3Q8TF72 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
SHROOM3Q8TF72 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SHROOM3Q8TF72 NFYC-AS1-201ENST00000606277 1687 ntBASIC19.31■□□□□ 0.68
SHROOM3Q8TF72 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SHROOM3Q8TF72 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
SHROOM3Q8TF72 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SHROOM3Q8TF72 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SHROOM3Q8TF72 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SHROOM3Q8TF72 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SHROOM3Q8TF72 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
SHROOM3Q8TF72 CRYGFP-201ENST00000418459 633 ntBASIC19.31■□□□□ 0.68
SHROOM3Q8TF72 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC19.31■□□□□ 0.68
SHROOM3Q8TF72 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC19.31■□□□□ 0.68
SHROOM3Q8TF72 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SHROOM3Q8TF72 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC19.31■□□□□ 0.68
SHROOM3Q8TF72 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
SHROOM3Q8TF72 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC19.31■□□□□ 0.68
SHROOM3Q8TF72 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC19.31■□□□□ 0.68
SHROOM3Q8TF72 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
SHROOM3Q8TF72 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
SHROOM3Q8TF72 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
SHROOM3Q8TF72 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC19.3■□□□□ 0.68
SHROOM3Q8TF72 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SHROOM3Q8TF72 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SHROOM3Q8TF72 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SHROOM3Q8TF72 CRAT-202ENST00000393384 973 ntTSL 2 BASIC19.3■□□□□ 0.68
SHROOM3Q8TF72 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SHROOM3Q8TF72 AC008040.2-201ENST00000461049 708 ntBASIC19.3■□□□□ 0.68
SHROOM3Q8TF72 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC19.3■□□□□ 0.68
SHROOM3Q8TF72 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC19.3■□□□□ 0.68
SHROOM3Q8TF72 AC008622.2-201ENST00000617006 1229 ntBASIC19.3■□□□□ 0.68
SHROOM3Q8TF72 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
SHROOM3Q8TF72 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SHROOM3Q8TF72 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
SHROOM3Q8TF72 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms