Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
VRK3Q8IV63 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
VRK3Q8IV63 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC18.55■□□□□ 0.56
VRK3Q8IV63 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC18.55■□□□□ 0.56
VRK3Q8IV63 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
VRK3Q8IV63 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC18.55■□□□□ 0.56
VRK3Q8IV63 CYGB-204ENST00000589342 815 ntTSL 3 BASIC18.55■□□□□ 0.56
VRK3Q8IV63 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
VRK3Q8IV63 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
VRK3Q8IV63 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
VRK3Q8IV63 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
VRK3Q8IV63 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
VRK3Q8IV63 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC18.55■□□□□ 0.56
VRK3Q8IV63 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC18.55■□□□□ 0.56
VRK3Q8IV63 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
VRK3Q8IV63 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
VRK3Q8IV63 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC18.55■□□□□ 0.56
VRK3Q8IV63 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
VRK3Q8IV63 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
VRK3Q8IV63 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
VRK3Q8IV63 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
VRK3Q8IV63 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
VRK3Q8IV63 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC18.54■□□□□ 0.56
VRK3Q8IV63 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
VRK3Q8IV63 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
VRK3Q8IV63 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
VRK3Q8IV63 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC18.54■□□□□ 0.56
VRK3Q8IV63 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
VRK3Q8IV63 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC18.54■□□□□ 0.56
VRK3Q8IV63 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC18.54■□□□□ 0.56
VRK3Q8IV63 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
VRK3Q8IV63 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC18.54■□□□□ 0.56
VRK3Q8IV63 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC18.54■□□□□ 0.56
VRK3Q8IV63 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
VRK3Q8IV63 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
VRK3Q8IV63 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
VRK3Q8IV63 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
VRK3Q8IV63 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
VRK3Q8IV63 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
VRK3Q8IV63 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
VRK3Q8IV63 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
VRK3Q8IV63 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
VRK3Q8IV63 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
VRK3Q8IV63 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC18.54■□□□□ 0.56
VRK3Q8IV63 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
VRK3Q8IV63 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC18.53■□□□□ 0.56
VRK3Q8IV63 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
VRK3Q8IV63 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
VRK3Q8IV63 CYP2D8P-201ENST00000433633 1490 ntBASIC18.53■□□□□ 0.56
VRK3Q8IV63 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
VRK3Q8IV63 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
VRK3Q8IV63 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
VRK3Q8IV63 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
VRK3Q8IV63 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC18.53■□□□□ 0.56
VRK3Q8IV63 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC18.53■□□□□ 0.56
VRK3Q8IV63 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
VRK3Q8IV63 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC18.53■□□□□ 0.56
VRK3Q8IV63 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
VRK3Q8IV63 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC18.53■□□□□ 0.56
VRK3Q8IV63 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC18.53■□□□□ 0.56
VRK3Q8IV63 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC18.53■□□□□ 0.56
VRK3Q8IV63 AC008622.2-201ENST00000617006 1229 ntBASIC18.53■□□□□ 0.56
VRK3Q8IV63 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC18.53■□□□□ 0.56
VRK3Q8IV63 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
VRK3Q8IV63 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
VRK3Q8IV63 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
VRK3Q8IV63 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
VRK3Q8IV63 AC004408.2-201ENST00000623613 2777 ntBASIC18.53■□□□□ 0.56
VRK3Q8IV63 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC18.52■□□□□ 0.56
VRK3Q8IV63 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
VRK3Q8IV63 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
VRK3Q8IV63 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
VRK3Q8IV63 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.56
VRK3Q8IV63 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
VRK3Q8IV63 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
VRK3Q8IV63 KRT8P3-201ENST00000519669 1449 ntBASIC18.52■□□□□ 0.56
VRK3Q8IV63 AC093503.3-201ENST00000624917 2352 ntBASIC18.52■□□□□ 0.56
VRK3Q8IV63 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC18.52■□□□□ 0.56
VRK3Q8IV63 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC18.52■□□□□ 0.56
VRK3Q8IV63 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC18.52■□□□□ 0.56
VRK3Q8IV63 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC18.52■□□□□ 0.56
VRK3Q8IV63 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
VRK3Q8IV63 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC18.52■□□□□ 0.56
VRK3Q8IV63 BX088651.1-201ENST00000540551 451 ntBASIC18.52■□□□□ 0.56
VRK3Q8IV63 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC18.52■□□□□ 0.56
VRK3Q8IV63 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC18.52■□□□□ 0.56
VRK3Q8IV63 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
VRK3Q8IV63 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
VRK3Q8IV63 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC18.52■□□□□ 0.56
VRK3Q8IV63 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
VRK3Q8IV63 CROCCP3-202ENST00000420820 1947 ntBASIC18.52■□□□□ 0.56
VRK3Q8IV63 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
VRK3Q8IV63 AC120498.9-201ENST00000339021 3867 ntBASIC18.52■□□□□ 0.55
VRK3Q8IV63 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
VRK3Q8IV63 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC18.52■□□□□ 0.55
VRK3Q8IV63 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.55
VRK3Q8IV63 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC18.52■□□□□ 0.55
VRK3Q8IV63 KATNBL1P6-202ENST00000562413 1466 ntBASIC18.52■□□□□ 0.55
VRK3Q8IV63 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC18.51■□□□□ 0.55
VRK3Q8IV63 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 57.9 ms