Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
H3F3AP84243 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC16.97■□□□□ 0.31
H3F3AP84243 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
H3F3AP84243 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
H3F3AP84243 BX323043.1-201ENST00000641006 1765 ntBASIC16.97■□□□□ 0.31
H3F3AP84243 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
H3F3AP84243 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC16.97■□□□□ 0.31
H3F3AP84243 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
H3F3AP84243 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC16.96■□□□□ 0.31
H3F3AP84243 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC16.96■□□□□ 0.31
H3F3AP84243 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
H3F3AP84243 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
H3F3AP84243 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
H3F3AP84243 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC16.96■□□□□ 0.31
H3F3AP84243 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
H3F3AP84243 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC16.96■□□□□ 0.31
H3F3AP84243 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
H3F3AP84243 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
H3F3AP84243 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC16.96■□□□□ 0.31
H3F3AP84243 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC16.96■□□□□ 0.31
H3F3AP84243 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
H3F3AP84243 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
H3F3AP84243 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC16.96■□□□□ 0.3
H3F3AP84243 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC16.96■□□□□ 0.3
H3F3AP84243 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC16.96■□□□□ 0.3
H3F3AP84243 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.3
H3F3AP84243 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC16.96■□□□□ 0.3
H3F3AP84243 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
H3F3AP84243 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
H3F3AP84243 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC16.96■□□□□ 0.3
H3F3AP84243 KRT8P3-201ENST00000519669 1449 ntBASIC16.96■□□□□ 0.3
H3F3AP84243 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC16.95■□□□□ 0.3
H3F3AP84243 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC16.95■□□□□ 0.3
H3F3AP84243 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
H3F3AP84243 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
H3F3AP84243 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC16.95■□□□□ 0.3
H3F3AP84243 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC16.95■□□□□ 0.3
H3F3AP84243 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
H3F3AP84243 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
H3F3AP84243 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
H3F3AP84243 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
H3F3AP84243 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
H3F3AP84243 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
H3F3AP84243 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
H3F3AP84243 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
H3F3AP84243 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
H3F3AP84243 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
H3F3AP84243 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC16.95■□□□□ 0.3
H3F3AP84243 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
H3F3AP84243 MIR1238-201ENST00000408483 83 ntBASIC16.95■□□□□ 0.3
H3F3AP84243 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
H3F3AP84243 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
H3F3AP84243 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC16.95■□□□□ 0.3
H3F3AP84243 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC16.95■□□□□ 0.3
H3F3AP84243 CYGB-204ENST00000589342 815 ntTSL 3 BASIC16.95■□□□□ 0.3
H3F3AP84243 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC16.95■□□□□ 0.3
H3F3AP84243 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC16.95■□□□□ 0.3
H3F3AP84243 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
H3F3AP84243 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC16.95■□□□□ 0.3
H3F3AP84243 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
H3F3AP84243 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
H3F3AP84243 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC16.95■□□□□ 0.3
H3F3AP84243 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
H3F3AP84243 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
H3F3AP84243 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
H3F3AP84243 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
H3F3AP84243 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC16.94■□□□□ 0.3
H3F3AP84243 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC16.94■□□□□ 0.3
H3F3AP84243 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
H3F3AP84243 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
H3F3AP84243 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC16.94■□□□□ 0.3
H3F3AP84243 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC16.94■□□□□ 0.3
H3F3AP84243 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
H3F3AP84243 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
H3F3AP84243 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
H3F3AP84243 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
H3F3AP84243 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC16.94■□□□□ 0.3
H3F3AP84243 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
H3F3AP84243 AL390955.1-201ENST00000428694 934 ntBASIC16.94■□□□□ 0.3
H3F3AP84243 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
H3F3AP84243 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC16.94■□□□□ 0.3
H3F3AP84243 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC16.94■□□□□ 0.3
H3F3AP84243 BX088651.1-201ENST00000540551 451 ntBASIC16.94■□□□□ 0.3
H3F3AP84243 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
H3F3AP84243 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC16.94■□□□□ 0.3
H3F3AP84243 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC16.94■□□□□ 0.3
H3F3AP84243 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC16.94■□□□□ 0.3
H3F3AP84243 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
H3F3AP84243 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
H3F3AP84243 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
H3F3AP84243 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC16.94■□□□□ 0.3
H3F3AP84243 AC018445.3-201ENST00000624177 1945 ntBASIC16.94■□□□□ 0.3
H3F3AP84243 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC16.94■□□□□ 0.3
H3F3AP84243 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
H3F3AP84243 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
H3F3AP84243 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC16.93■□□□□ 0.3
H3F3AP84243 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC16.93■□□□□ 0.3
H3F3AP84243 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
H3F3AP84243 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
H3F3AP84243 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 17.1 ms