Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 DCLRE1C-205ENST00000378249 2246 ntTSL 1 (best) BASIC9.96□□□□□ -0.823e-6■■■■■ 137.9
SF3B1O75533 BCO2-208ENST00000526088 1983 ntTSL 2 BASIC9.95□□□□□ -0.823e-6■■■■■ 137.9
SF3B1O75533 WIPI2-213ENST00000488359 602 ntTSL 39.92□□□□□ -0.823e-6■■■■■ 137.9
SF3B1O75533 ALAD-202ENST00000445750 703 ntTSL 39.92□□□□□ -0.823e-6■■■■■ 137.9
SF3B1O75533 LIN52-205ENST00000555028 2776 ntAPPRIS P1 TSL 1 (best) BASIC9.91□□□□□ -0.823e-6■■■■■ 137.9
SF3B1O75533 RAB14-202ENST00000451303 711 ntTSL 39.91□□□□□ -0.823e-6■■■■■ 137.9
SF3B1O75533 BCAS3-231ENST00000592848 918 ntTSL 59.91□□□□□ -0.823e-6■■■■■ 137.9
SF3B1O75533 KLC4-209ENST00000467906 3604 ntTSL 29.91□□□□□ -0.823e-6■■■■■ 137.9
SF3B1O75533 BARD1-213ENST00000619009 3967 ntTSL 1 (best) BASIC9.9□□□□□ -0.833e-6■■■■■ 137.9
SF3B1O75533 PGK1-204ENST00000477335 353 ntTSL 39.89□□□□□ -0.833e-6■■■■■ 137.9
SF3B1O75533 SCG5-204ENST00000471027 659 ntTSL 29.89□□□□□ -0.833e-6■■■■■ 137.9
SF3B1O75533 NBEAL1-207ENST00000478884 1012 ntTSL 1 (best)9.89□□□□□ -0.833e-6■■■■■ 137.9
SF3B1O75533 TGS1-203ENST00000523948 3159 ntTSL 1 (best)9.88□□□□□ -0.833e-6■■■■■ 137.9
SF3B1O75533 DHX35-207ENST00000493450 2958 ntTSL 29.88□□□□□ -0.833e-6■■■■■ 137.9
SF3B1O75533 DNAJC7-218ENST00000590348 832 ntTSL 59.87□□□□□ -0.833e-6■■■■■ 137.9
SF3B1O75533 HERC3-202ENST00000402738 4974 ntAPPRIS P1 TSL 1 (best) BASIC9.87□□□□□ -0.836e-8■■■■■ 137.9
SF3B1O75533 TBC1D13-201ENST00000223865 3378 ntTSL 2 BASIC9.86□□□□□ -0.833e-6■■■■■ 137.9
SF3B1O75533 KIF1A-212ENST00000494452 583 ntTSL 29.83□□□□□ -0.843e-6■■■■■ 137.9
SF3B1O75533 PDCD6-208ENST00000511482 878 ntTSL 59.82□□□□□ -0.843e-6■■■■■ 137.9
SF3B1O75533 TRIM5-206ENST00000433961 2759 ntTSL 29.82□□□□□ -0.845e-6■■■■■ 137.9
SF3B1O75533 FAM13A-213ENST00000509094 2762 ntAPPRIS ALT2 TSL 1 (best) BASIC9.82□□□□□ -0.843e-6■■■■■ 137.9
SF3B1O75533 DNAJC7-223ENST00000591787 566 ntTSL 49.82□□□□□ -0.843e-6■■■■■ 137.9
SF3B1O75533 CHN2-226ENST00000495789 725 ntTSL 1 (best) BASIC9.8□□□□□ -0.843e-6■■■■■ 137.9
SF3B1O75533 ZNF626-203ENST00000601440 5963 ntTSL 4 BASIC9.79□□□□□ -0.843e-6■■■■■ 137.9
SF3B1O75533 ZNF626-201ENST00000291750 1123 ntTSL 1 (best) BASIC9.79□□□□□ -0.843e-6■■■■■ 137.9
SF3B1O75533 RHOH-208ENST00000508513 874 ntTSL 39.79□□□□□ -0.843e-6■■■■■ 137.9
SF3B1O75533 RUNX1-206ENST00000416754 346 ntTSL 1 (best)9.79□□□□□ -0.843e-6■■■■■ 137.9
SF3B1O75533 KIAA0319L-205ENST00000440579 2171 ntTSL 29.76□□□□□ -0.853e-6■■■■■ 137.9
SF3B1O75533 NDUFS4-205ENST00000507026 680 ntTSL 39.76□□□□□ -0.853e-6■■■■■ 137.9
SF3B1O75533 TRIM5-211ENST00000492086 662 ntTSL 39.75□□□□□ -0.855e-6■■■■■ 137.9
SF3B1O75533 DNAJC7-215ENST00000589773 678 ntTSL 39.74□□□□□ -0.853e-6■■■■■ 137.9
SF3B1O75533 ADNP-204ENST00000396032 4581 ntAPPRIS P1 TSL 2 BASIC9.73□□□□□ -0.853e-6■■■■■ 137.9
SF3B1O75533 DOCK9-201ENST00000339416 5653 ntTSL 29.72□□□□□ -0.853e-6■■■■■ 137.9
SF3B1O75533 NUP85-223ENST00000583877 575 ntTSL 39.71□□□□□ -0.863e-6■■■■■ 137.9
SF3B1O75533 MFSD9-204ENST00000428085 576 ntTSL 59.71□□□□□ -0.863e-6■■■■■ 137.9
SF3B1O75533 RHOH-203ENST00000503941 789 ntTSL 29.71□□□□□ -0.863e-6■■■■■ 137.9
SF3B1O75533 QKI-211ENST00000540719 588 ntTSL 29.7□□□□□ -0.862e-11■■■■■ 137.9
SF3B1O75533 CYFIP1-202ENST00000561263 707 ntTSL 29.7□□□□□ -0.863e-6■■■■■ 137.9
SF3B1O75533 CCNDBP1-202ENST00000444658 1479 ntTSL 29.7□□□□□ -0.862e-11■■■■■ 137.9
SF3B1O75533 DIABLO-213ENST00000540535 703 ntTSL 39.69□□□□□ -0.862e-11■■■■■ 137.9
SF3B1O75533 PLAUR-204ENST00000593396 650 ntTSL 39.69□□□□□ -0.863e-6■■■■■ 137.9
SF3B1O75533 CHD8-210ENST00000555962 1232 ntTSL 59.68□□□□□ -0.863e-6■■■■■ 137.9
SF3B1O75533 AC108058.1-201ENST00000457290 2044 ntTSL 1 (best) BASIC9.68□□□□□ -0.863e-6■■■■■ 137.9
SF3B1O75533 EPB41L2-221ENST00000529208 3023 ntAPPRIS ALT2 TSL 5 BASIC9.67□□□□□ -0.863e-6■■■■■ 137.9
SF3B1O75533 BMPR1A-201ENST00000372037 11255 ntAPPRIS P1 TSL 1 (best) BASIC9.66□□□□□ -0.863e-6■■■■■ 137.9
SF3B1O75533 EZH1-204ENST00000585550 1643 ntTSL 1 (best)9.65□□□□□ -0.863e-6■■■■■ 137.9
SF3B1O75533 OPTN-205ENST00000378757 3321 ntAPPRIS P2 TSL 1 (best) BASIC9.62□□□□□ -0.873e-6■■■■■ 137.9
SF3B1O75533 EXTL3-202ENST00000454906 539 ntTSL 49.61□□□□□ -0.873e-6■■■■■ 137.9
SF3B1O75533 DCLRE1C-207ENST00000378255 2807 ntTSL 1 (best) BASIC9.61□□□□□ -0.873e-6■■■■■ 137.9
SF3B1O75533 ATXN1-202ENST00000436367 10587 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.873e-6■■■■■ 137.9
SF3B1O75533 PPFIA1-219ENST00000531657 3036 ntTSL 29.6□□□□□ -0.873e-6■■■■■ 137.9
SF3B1O75533 ADNP-206ENST00000621696 6224 ntAPPRIS P1 TSL 5 BASIC9.59□□□□□ -0.873e-6■■■■■ 137.9
SF3B1O75533 PGK1-205ENST00000491291 702 ntTSL 59.59□□□□□ -0.873e-6■■■■■ 137.9
SF3B1O75533 ZNF410-224ENST00000615736 1551 ntTSL 5 BASIC9.59□□□□□ -0.873e-6■■■■■ 137.9
SF3B1O75533 CHN2-211ENST00000424025 2279 ntTSL 1 (best) BASIC9.59□□□□□ -0.873e-6■■■■■ 137.9
SF3B1O75533 DCLRE1C-209ENST00000378278 2354 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.873e-6■■■■■ 137.9
SF3B1O75533 VRK1-206ENST00000557222 1029 ntTSL 59.58□□□□□ -0.883e-6■■■■■ 137.9
SF3B1O75533 ZNF131-204ENST00000503599 750 ntTSL 39.56□□□□□ -0.882e-11■■■■■ 137.9
SF3B1O75533 ASCC1-202ENST00000317168 2002 ntAPPRIS P1 TSL 2 BASIC9.56□□□□□ -0.883e-6■■■■■ 137.9
SF3B1O75533 NCS1-202ENST00000493042 232 ntTSL 39.56□□□□□ -0.883e-6■■■■■ 137.9
SF3B1O75533 MAP7D3-203ENST00000370661 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC9.55□□□□□ -0.883e-6■■■■■ 137.9
SF3B1O75533 THADA-202ENST00000402360 2974 ntTSL 5 BASIC9.55□□□□□ -0.883e-6■■■■■ 137.9
SF3B1O75533 AL139353.1-201ENST00000549185 3860 ntTSL 29.55□□□□□ -0.883e-6■■■■■ 137.9
SF3B1O75533 KCTD10-214ENST00000542858 564 ntTSL 39.53□□□□□ -0.883e-6■■■■■ 137.9
SF3B1O75533 RASGRP4-216ENST00000615340 4074 ntTSL 59.52□□□□□ -0.883e-6■■■■■ 137.9
SF3B1O75533 THADA-206ENST00000405006 6310 ntAPPRIS P1 TSL 1 (best) BASIC9.49□□□□□ -0.893e-6■■■■■ 137.9
SF3B1O75533 LINC02455-201ENST00000541881 496 ntTSL 3 BASIC9.48□□□□□ -0.893e-6■■■■■ 137.9
SF3B1O75533 RBBP8-205ENST00000399725 3260 ntTSL 1 (best) BASIC9.48□□□□□ -0.893e-6■■■■■ 137.9
SF3B1O75533 GDI2-208ENST00000608581 634 ntTSL 39.46□□□□□ -0.93e-6■■■■■ 137.9
SF3B1O75533 DHDDS-222ENST00000530781 556 ntTSL 49.46□□□□□ -0.93e-6■■■■■ 137.9
SF3B1O75533 SCG5-206ENST00000494364 1148 ntTSL 5 BASIC9.46□□□□□ -0.93e-6■■■■■ 137.9
SF3B1O75533 SPARC-204ENST00000521569 602 ntTSL 29.46□□□□□ -0.93e-6■■■■■ 137.9
SF3B1O75533 MPP7-203ENST00000375732 5063 ntAPPRIS P1 TSL 2 BASIC9.45□□□□□ -0.93e-6■■■■■ 137.9
SF3B1O75533 DCLRE1C-204ENST00000378246 2637 ntTSL 1 (best) BASIC9.45□□□□□ -0.93e-6■■■■■ 137.9
SF3B1O75533 NXN-205ENST00000571338 586 ntTSL 49.45□□□□□ -0.93e-6■■■■■ 137.9
SF3B1O75533 INTS6-215ENST00000490542 2307 ntTSL 5 BASIC9.42□□□□□ -0.93e-6■■■■■ 137.9
SF3B1O75533 SIMC1-201ENST00000332772 1891 ntAPPRIS ALT2 TSL 1 (best) BASIC9.42□□□□□ -0.93e-6■■■■■ 137.9
SF3B1O75533 SNCA-211ENST00000508895 905 ntAPPRIS P1 TSL 3 BASIC9.42□□□□□ -0.93e-6■■■■■ 137.9
SF3B1O75533 SNCA-212ENST00000611107 297 ntTSL 5 BASIC9.42□□□□□ -0.93e-6■■■■■ 137.9
SF3B1O75533 GPD1L-204ENST00000429432 594 ntTSL 49.4□□□□□ -0.93e-6■■■■■ 137.9
SF3B1O75533 OSBPL3-202ENST00000396429 2707 ntTSL 1 (best) BASIC9.39□□□□□ -0.913e-6■■■■■ 137.9
SF3B1O75533 AC005779.1-201ENST00000591569 540 ntTSL 3 BASIC9.38□□□□□ -0.913e-6■■■■■ 137.9
SF3B1O75533 OPTN-204ENST00000378752 3488 ntAPPRIS ALT1 TSL 1 (best) BASIC9.38□□□□□ -0.913e-6■■■■■ 137.9
SF3B1O75533 PPIH-204ENST00000436387 416 ntTSL 39.37□□□□□ -0.913e-6■■■■■ 137.9
SF3B1O75533 ZMYND11-212ENST00000473115 603 ntTSL 49.34□□□□□ -0.913e-6■■■■■ 137.9
SF3B1O75533 ATXN1-201ENST00000244769 10602 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.913e-6■■■■■ 137.9
SF3B1O75533 CDADC1-204ENST00000484126 644 ntTSL 39.33□□□□□ -0.923e-6■■■■■ 137.9
SF3B1O75533 OSBPL3-203ENST00000396431 2969 ntTSL 1 (best) BASIC9.3□□□□□ -0.923e-6■■■■■ 137.9
SF3B1O75533 LINC01572-202ENST00000563770 568 ntTSL 5 BASIC9.3□□□□□ -0.923e-6■■■■■ 137.9
SF3B1O75533 TPP1-212ENST00000530040 551 ntTSL 29.29□□□□□ -0.923e-6■■■■■ 137.9
SF3B1O75533 DMD-218ENST00000469142 555 ntTSL 49.28□□□□□ -0.923e-6■■■■■ 137.9
SF3B1O75533 UBR1-204ENST00000563239 545 ntTSL 39.28□□□□□ -0.923e-6■■■■■ 137.9
SF3B1O75533 ZNF143-218ENST00000534265 575 ntTSL 49.27□□□□□ -0.933e-6■■■■■ 137.9
SF3B1O75533 CLIP1-206ENST00000535290 665 ntTSL 29.27□□□□□ -0.933e-6■■■■■ 137.9
SF3B1O75533 OPTN-202ENST00000378747 3400 ntAPPRIS P2 TSL 1 (best) BASIC9.26□□□□□ -0.933e-6■■■■■ 137.9
SF3B1O75533 ZNF626-202ENST00000595405 501 ntTSL 39.26□□□□□ -0.933e-6■■■■■ 137.9
SF3B1O75533 N4BP1-203ENST00000564710 540 ntTSL 49.25□□□□□ -0.933e-6■■■■■ 137.9
SF3B1O75533 DDB1-213ENST00000539332 1767 ntTSL 29.24□□□□□ -0.933e-6■■■■■ 137.9
SF3B1O75533 ARMCX5-206ENST00000604957 4640 ntAPPRIS P1 BASIC9.23□□□□□ -0.933e-6■■■■■ 137.9
SF3B1O75533 DLD-205ENST00000440410 1993 ntTSL 2 BASIC9.22□□□□□ -0.933e-6■■■■■ 137.9
Retrieved 100 of 46,956 protein–RNA pairs in 1235.6 ms