Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
HMGB3O15347 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
HMGB3O15347 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC15.28■□□□□ 0.04
HMGB3O15347 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
HMGB3O15347 AC068880.1-201ENST00000507289 2297 ntBASIC15.28■□□□□ 0.04
HMGB3O15347 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
HMGB3O15347 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
HMGB3O15347 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC15.28■□□□□ 0.04
HMGB3O15347 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
HMGB3O15347 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC15.28■□□□□ 0.04
HMGB3O15347 NACC2-201ENST00000277554 6899 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
HMGB3O15347 SLITRK2-202ENST00000370490 7672 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
HMGB3O15347 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
HMGB3O15347 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
HMGB3O15347 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC15.27■□□□□ 0.04
HMGB3O15347 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC15.27■□□□□ 0.04
HMGB3O15347 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC15.27■□□□□ 0.04
HMGB3O15347 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
HMGB3O15347 ADAMTS14-202ENST00000373208 5269 ntAPPRIS P4 TSL 2 BASIC15.27■□□□□ 0.04
HMGB3O15347 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
HMGB3O15347 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
HMGB3O15347 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
HMGB3O15347 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC15.27■□□□□ 0.04
HMGB3O15347 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC15.27■□□□□ 0.04
HMGB3O15347 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC15.27■□□□□ 0.04
HMGB3O15347 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
HMGB3O15347 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC15.27■□□□□ 0.04
HMGB3O15347 IRS3P-201ENST00000223076 1006 ntBASIC15.27■□□□□ 0.04
HMGB3O15347 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
HMGB3O15347 VMO1-204ENST00000441199 741 ntTSL 2 BASIC15.27■□□□□ 0.04
HMGB3O15347 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC15.27■□□□□ 0.04
HMGB3O15347 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC15.27■□□□□ 0.04
HMGB3O15347 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.03
HMGB3O15347 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
HMGB3O15347 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.03
HMGB3O15347 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC15.27■□□□□ 0.03
HMGB3O15347 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
HMGB3O15347 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
HMGB3O15347 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.03
HMGB3O15347 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
HMGB3O15347 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
HMGB3O15347 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.03
HMGB3O15347 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
HMGB3O15347 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
HMGB3O15347 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
HMGB3O15347 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
HMGB3O15347 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
HMGB3O15347 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HMGB3O15347 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HMGB3O15347 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC15.26■□□□□ 0.03
HMGB3O15347 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
HMGB3O15347 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HMGB3O15347 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
HMGB3O15347 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC15.26■□□□□ 0.03
HMGB3O15347 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
HMGB3O15347 PXK-206ENST00000463280 2825 ntTSL 2 BASIC15.26■□□□□ 0.03
HMGB3O15347 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
HMGB3O15347 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HMGB3O15347 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HMGB3O15347 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
HMGB3O15347 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
HMGB3O15347 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HMGB3O15347 FP475955.4-201ENST00000623131 1990 ntBASIC15.26■□□□□ 0.03
HMGB3O15347 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HMGB3O15347 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
HMGB3O15347 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
HMGB3O15347 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
HMGB3O15347 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
HMGB3O15347 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC15.26■□□□□ 0.03
HMGB3O15347 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC15.26■□□□□ 0.03
HMGB3O15347 AF213884.3-201ENST00000563833 479 ntBASIC15.26■□□□□ 0.03
HMGB3O15347 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC15.26■□□□□ 0.03
HMGB3O15347 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC15.26■□□□□ 0.03
HMGB3O15347 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC15.26■□□□□ 0.03
HMGB3O15347 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HMGB3O15347 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HMGB3O15347 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
HMGB3O15347 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC15.26■□□□□ 0.03
HMGB3O15347 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC15.26■□□□□ 0.03
HMGB3O15347 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HMGB3O15347 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
HMGB3O15347 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC15.26■□□□□ 0.03
HMGB3O15347 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
HMGB3O15347 UMODL1-203ENST00000400424 5516 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
HMGB3O15347 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
HMGB3O15347 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
HMGB3O15347 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC15.25■□□□□ 0.03
HMGB3O15347 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC15.25■□□□□ 0.03
HMGB3O15347 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC15.25■□□□□ 0.03
HMGB3O15347 MEGF8-201ENST00000251268 9549 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
HMGB3O15347 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
HMGB3O15347 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
HMGB3O15347 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC15.25■□□□□ 0.03
HMGB3O15347 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
HMGB3O15347 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC15.25■□□□□ 0.03
HMGB3O15347 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
HMGB3O15347 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
HMGB3O15347 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC15.25■□□□□ 0.03
HMGB3O15347 AC097381.1-201ENST00000429019 1296 ntBASIC15.25■□□□□ 0.03
HMGB3O15347 AC096631.2-201ENST00000436136 790 ntBASIC15.25■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms