Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC25.59■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC25.59■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 ANKRD18DP-204ENST00000455355 1975 ntBASIC25.59■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC25.59■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC25.59■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC25.59■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC25.59■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC25.59■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 MIR6786-201ENST00000616843 113 ntBASIC25.59■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC25.59■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC25.59■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC25.59■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC25.59■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC25.59■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC25.59■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC25.59■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC25.59■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC25.59■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC25.59■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC25.58■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC25.58■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC25.58■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC25.58■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC25.58■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC25.58■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC25.58■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 MMP23A-201ENST00000234610 1017 ntBASIC25.58■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC25.58■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC25.58■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC25.58■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC25.58■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC25.58■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 AC113410.3-201ENST00000623366 203 ntBASIC25.58■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC25.58■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC25.58■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC25.58■■□□□ 1.69
SENP3-EIF4A1A0A087X0R7 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC25.57■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC25.57■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC25.57■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC25.57■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC25.57■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC25.57■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC25.57■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC25.57■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC25.57■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC25.57■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC25.57■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC25.57■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC25.57■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC25.57■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 NEFHP1-201ENST00000412845 2629 ntBASIC25.57■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC25.57■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC25.56■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC25.56■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC25.56■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC25.56■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC25.56■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC25.56■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC25.56■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC25.56■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC25.56■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC25.56■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC25.56■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC25.56■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC25.56■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC25.55■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC25.55■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC25.55■■□□□ 1.68
SENP3-EIF4A1A0A087X0R7 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
Retrieved 100 of 98,524 protein–RNA pairs in 19 ms