Protein–RNA interactions for Protein: Q9Y5E6

PCDHB3, Protocadherin beta-3, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3Q9Y5E6 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
PCDHB3Q9Y5E6 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC18.6■□□□□ 0.57
PCDHB3Q9Y5E6 MIR1238-201ENST00000408483 83 ntBASIC18.6■□□□□ 0.57
PCDHB3Q9Y5E6 NAPSB-206ENST00000562112 1266 ntBASIC18.6■□□□□ 0.57
PCDHB3Q9Y5E6 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC18.6■□□□□ 0.57
PCDHB3Q9Y5E6 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PCDHB3Q9Y5E6 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
PCDHB3Q9Y5E6 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
PCDHB3Q9Y5E6 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
PCDHB3Q9Y5E6 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PCDHB3Q9Y5E6 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PCDHB3Q9Y5E6 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
PCDHB3Q9Y5E6 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC18.6■□□□□ 0.57
PCDHB3Q9Y5E6 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC18.59■□□□□ 0.57
PCDHB3Q9Y5E6 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
PCDHB3Q9Y5E6 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
PCDHB3Q9Y5E6 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
PCDHB3Q9Y5E6 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
PCDHB3Q9Y5E6 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
PCDHB3Q9Y5E6 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
PCDHB3Q9Y5E6 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC18.59■□□□□ 0.57
PCDHB3Q9Y5E6 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC18.59■□□□□ 0.57
PCDHB3Q9Y5E6 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
PCDHB3Q9Y5E6 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
PCDHB3Q9Y5E6 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC18.59■□□□□ 0.57
PCDHB3Q9Y5E6 AP000525.1-201ENST00000608286 694 ntBASIC18.59■□□□□ 0.57
PCDHB3Q9Y5E6 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC18.59■□□□□ 0.57
PCDHB3Q9Y5E6 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PCDHB3Q9Y5E6 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC18.59■□□□□ 0.57
PCDHB3Q9Y5E6 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PCDHB3Q9Y5E6 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
PCDHB3Q9Y5E6 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
PCDHB3Q9Y5E6 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
PCDHB3Q9Y5E6 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
PCDHB3Q9Y5E6 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PCDHB3Q9Y5E6 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
PCDHB3Q9Y5E6 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC18.59■□□□□ 0.57
PCDHB3Q9Y5E6 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
PCDHB3Q9Y5E6 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PCDHB3Q9Y5E6 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
PCDHB3Q9Y5E6 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
PCDHB3Q9Y5E6 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
PCDHB3Q9Y5E6 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PCDHB3Q9Y5E6 AC079598.2-202ENST00000546624 1451 ntBASIC18.58■□□□□ 0.57
PCDHB3Q9Y5E6 FSCN1P1-201ENST00000568912 1481 ntBASIC18.58■□□□□ 0.57
PCDHB3Q9Y5E6 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
PCDHB3Q9Y5E6 LINC01568-207ENST00000641790 1380 ntBASIC18.58■□□□□ 0.57
PCDHB3Q9Y5E6 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.57
PCDHB3Q9Y5E6 KRT18P22-201ENST00000402024 1347 ntBASIC18.58■□□□□ 0.57
PCDHB3Q9Y5E6 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
PCDHB3Q9Y5E6 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC18.58■□□□□ 0.57
PCDHB3Q9Y5E6 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
PCDHB3Q9Y5E6 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
PCDHB3Q9Y5E6 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC18.58■□□□□ 0.56
PCDHB3Q9Y5E6 ARMC10P1-201ENST00000313754 855 ntBASIC18.58■□□□□ 0.56
PCDHB3Q9Y5E6 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
PCDHB3Q9Y5E6 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC18.58■□□□□ 0.56
PCDHB3Q9Y5E6 NT5C-211ENST00000582170 653 ntTSL 3 BASIC18.58■□□□□ 0.56
PCDHB3Q9Y5E6 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC18.58■□□□□ 0.56
PCDHB3Q9Y5E6 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC18.58■□□□□ 0.56
PCDHB3Q9Y5E6 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
PCDHB3Q9Y5E6 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC18.58■□□□□ 0.56
PCDHB3Q9Y5E6 AL445228.2-201ENST00000605589 952 ntBASIC18.58■□□□□ 0.56
PCDHB3Q9Y5E6 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC18.58■□□□□ 0.56
PCDHB3Q9Y5E6 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
PCDHB3Q9Y5E6 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC18.58■□□□□ 0.56
PCDHB3Q9Y5E6 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
PCDHB3Q9Y5E6 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
PCDHB3Q9Y5E6 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC18.58■□□□□ 0.56
PCDHB3Q9Y5E6 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
PCDHB3Q9Y5E6 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
PCDHB3Q9Y5E6 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC18.58■□□□□ 0.56
PCDHB3Q9Y5E6 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC18.58■□□□□ 0.56
PCDHB3Q9Y5E6 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
PCDHB3Q9Y5E6 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
PCDHB3Q9Y5E6 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
PCDHB3Q9Y5E6 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
PCDHB3Q9Y5E6 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC18.57■□□□□ 0.56
PCDHB3Q9Y5E6 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
PCDHB3Q9Y5E6 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
PCDHB3Q9Y5E6 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
PCDHB3Q9Y5E6 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC18.57■□□□□ 0.56
PCDHB3Q9Y5E6 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
PCDHB3Q9Y5E6 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
PCDHB3Q9Y5E6 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
PCDHB3Q9Y5E6 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
PCDHB3Q9Y5E6 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
PCDHB3Q9Y5E6 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
PCDHB3Q9Y5E6 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
PCDHB3Q9Y5E6 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC18.57■□□□□ 0.56
PCDHB3Q9Y5E6 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
PCDHB3Q9Y5E6 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
PCDHB3Q9Y5E6 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
PCDHB3Q9Y5E6 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC18.57■□□□□ 0.56
PCDHB3Q9Y5E6 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
PCDHB3Q9Y5E6 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
PCDHB3Q9Y5E6 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
PCDHB3Q9Y5E6 RMI2-205ENST00000576027 818 ntTSL 2 BASIC18.57■□□□□ 0.56
PCDHB3Q9Y5E6 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC18.57■□□□□ 0.56
PCDHB3Q9Y5E6 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC18.57■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 20.7 ms