Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC16.68■□□□□ 0.26
LIME1Q9H400 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
LIME1Q9H400 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
LIME1Q9H400 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
LIME1Q9H400 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
LIME1Q9H400 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
LIME1Q9H400 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC16.67■□□□□ 0.26
LIME1Q9H400 MOK-225ENST00000522867 1883 ntTSL 5 BASIC16.67■□□□□ 0.26
LIME1Q9H400 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC16.67■□□□□ 0.26
LIME1Q9H400 AC096733.2-201ENST00000609937 1394 ntBASIC16.67■□□□□ 0.26
LIME1Q9H400 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC16.67■□□□□ 0.26
LIME1Q9H400 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC16.67■□□□□ 0.26
LIME1Q9H400 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
LIME1Q9H400 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
LIME1Q9H400 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
LIME1Q9H400 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
LIME1Q9H400 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
LIME1Q9H400 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
LIME1Q9H400 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
LIME1Q9H400 BET1L-202ENST00000332865 533 ntTSL 5 BASIC16.67■□□□□ 0.26
LIME1Q9H400 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
LIME1Q9H400 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
LIME1Q9H400 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
LIME1Q9H400 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
LIME1Q9H400 HCG4P8-203ENST00000443049 980 ntBASIC16.67■□□□□ 0.26
LIME1Q9H400 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC16.67■□□□□ 0.26
LIME1Q9H400 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
LIME1Q9H400 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC16.67■□□□□ 0.26
LIME1Q9H400 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
LIME1Q9H400 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC16.67■□□□□ 0.26
LIME1Q9H400 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
LIME1Q9H400 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
LIME1Q9H400 AC092338.2-201ENST00000568827 1415 ntBASIC16.67■□□□□ 0.26
LIME1Q9H400 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC16.67■□□□□ 0.26
LIME1Q9H400 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC16.67■□□□□ 0.26
LIME1Q9H400 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
LIME1Q9H400 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
LIME1Q9H400 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC16.67■□□□□ 0.26
LIME1Q9H400 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
LIME1Q9H400 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC16.67■□□□□ 0.26
LIME1Q9H400 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
LIME1Q9H400 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
LIME1Q9H400 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC16.66■□□□□ 0.26
LIME1Q9H400 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
LIME1Q9H400 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
LIME1Q9H400 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
LIME1Q9H400 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
LIME1Q9H400 ANKRD20A18P-201ENST00000359341 492 ntBASIC16.66■□□□□ 0.26
LIME1Q9H400 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
LIME1Q9H400 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC16.66■□□□□ 0.26
LIME1Q9H400 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC16.66■□□□□ 0.26
LIME1Q9H400 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
LIME1Q9H400 SLC25A1P2-201ENST00000430693 912 ntBASIC16.66■□□□□ 0.26
LIME1Q9H400 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
LIME1Q9H400 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
LIME1Q9H400 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC16.66■□□□□ 0.26
LIME1Q9H400 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC16.66■□□□□ 0.26
LIME1Q9H400 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC16.66■□□□□ 0.26
LIME1Q9H400 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC16.66■□□□□ 0.26
LIME1Q9H400 CLEC4GP1-201ENST00000596555 870 ntBASIC16.66■□□□□ 0.26
LIME1Q9H400 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC16.66■□□□□ 0.26
LIME1Q9H400 AL023973.1-201ENST00000624619 620 ntBASIC16.66■□□□□ 0.26
LIME1Q9H400 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC16.66■□□□□ 0.26
LIME1Q9H400 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
LIME1Q9H400 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC16.66■□□□□ 0.26
LIME1Q9H400 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
LIME1Q9H400 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
LIME1Q9H400 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
LIME1Q9H400 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC16.66■□□□□ 0.26
LIME1Q9H400 AC005332.1-201ENST00000577698 1310 ntBASIC16.66■□□□□ 0.26
LIME1Q9H400 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC16.66■□□□□ 0.26
LIME1Q9H400 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC16.66■□□□□ 0.26
LIME1Q9H400 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
LIME1Q9H400 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC16.66■□□□□ 0.26
LIME1Q9H400 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC16.66■□□□□ 0.26
LIME1Q9H400 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
LIME1Q9H400 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
LIME1Q9H400 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC16.65■□□□□ 0.26
LIME1Q9H400 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
LIME1Q9H400 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
LIME1Q9H400 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC16.65■□□□□ 0.26
LIME1Q9H400 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
LIME1Q9H400 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
LIME1Q9H400 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC16.65■□□□□ 0.26
LIME1Q9H400 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
LIME1Q9H400 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC16.65■□□□□ 0.26
LIME1Q9H400 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
LIME1Q9H400 AL671277.2-201ENST00000458060 996 ntBASIC16.65■□□□□ 0.26
LIME1Q9H400 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC16.65■□□□□ 0.26
LIME1Q9H400 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC16.65■□□□□ 0.26
LIME1Q9H400 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
LIME1Q9H400 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC16.65■□□□□ 0.26
LIME1Q9H400 AL441883.1-201ENST00000566170 1045 ntBASIC16.65■□□□□ 0.26
LIME1Q9H400 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC16.65■□□□□ 0.26
LIME1Q9H400 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC16.65■□□□□ 0.26
LIME1Q9H400 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC16.65■□□□□ 0.26
LIME1Q9H400 AC010653.2-201ENST00000623505 997 ntBASIC16.65■□□□□ 0.26
LIME1Q9H400 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC16.65■□□□□ 0.26
LIME1Q9H400 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC16.65■□□□□ 0.26
LIME1Q9H400 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC16.65■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms