Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
CCDC140Q96MF4 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
CCDC140Q96MF4 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
CCDC140Q96MF4 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
CCDC140Q96MF4 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
CCDC140Q96MF4 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC14.71□□□□□ -0.05
CCDC140Q96MF4 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CCDC140Q96MF4 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC14.71□□□□□ -0.05
CCDC140Q96MF4 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CCDC140Q96MF4 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC14.71□□□□□ -0.05
CCDC140Q96MF4 AC004408.2-201ENST00000623613 2777 ntBASIC14.71□□□□□ -0.05
CCDC140Q96MF4 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC14.71□□□□□ -0.05
CCDC140Q96MF4 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.05
CCDC140Q96MF4 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
CCDC140Q96MF4 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC14.71□□□□□ -0.05
CCDC140Q96MF4 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.05
CCDC140Q96MF4 TSPY7P-201ENST00000431358 1114 ntBASIC14.71□□□□□ -0.05
CCDC140Q96MF4 AL355355.2-201ENST00000442321 338 ntBASIC14.71□□□□□ -0.05
CCDC140Q96MF4 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC14.71□□□□□ -0.05
CCDC140Q96MF4 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.05
CCDC140Q96MF4 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC14.71□□□□□ -0.05
CCDC140Q96MF4 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC14.71□□□□□ -0.05
CCDC140Q96MF4 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC14.71□□□□□ -0.05
CCDC140Q96MF4 DGCR10-201ENST00000609839 495 ntBASIC14.71□□□□□ -0.05
CCDC140Q96MF4 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC14.71□□□□□ -0.05
CCDC140Q96MF4 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CCDC140Q96MF4 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CCDC140Q96MF4 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC14.71□□□□□ -0.06
CCDC140Q96MF4 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC14.71□□□□□ -0.06
CCDC140Q96MF4 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
CCDC140Q96MF4 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC14.71□□□□□ -0.06
CCDC140Q96MF4 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC14.71□□□□□ -0.06
CCDC140Q96MF4 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
CCDC140Q96MF4 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC14.71□□□□□ -0.06
CCDC140Q96MF4 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
CCDC140Q96MF4 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC14.7□□□□□ -0.06
CCDC140Q96MF4 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
CCDC140Q96MF4 CROCCP3-202ENST00000420820 1947 ntBASIC14.7□□□□□ -0.06
CCDC140Q96MF4 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
CCDC140Q96MF4 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CCDC140Q96MF4 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC14.7□□□□□ -0.06
CCDC140Q96MF4 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CCDC140Q96MF4 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC14.7□□□□□ -0.06
CCDC140Q96MF4 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC14.7□□□□□ -0.06
CCDC140Q96MF4 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
CCDC140Q96MF4 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CCDC140Q96MF4 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC14.7□□□□□ -0.06
CCDC140Q96MF4 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC14.7□□□□□ -0.06
CCDC140Q96MF4 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CCDC140Q96MF4 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
CCDC140Q96MF4 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
CCDC140Q96MF4 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
CCDC140Q96MF4 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC14.7□□□□□ -0.06
CCDC140Q96MF4 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC14.7□□□□□ -0.06
CCDC140Q96MF4 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC14.7□□□□□ -0.06
CCDC140Q96MF4 AP003071.4-201ENST00000562276 1284 ntBASIC14.7□□□□□ -0.06
CCDC140Q96MF4 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CCDC140Q96MF4 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC14.7□□□□□ -0.06
CCDC140Q96MF4 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CCDC140Q96MF4 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC14.7□□□□□ -0.06
CCDC140Q96MF4 AC096733.2-201ENST00000609937 1394 ntBASIC14.7□□□□□ -0.06
CCDC140Q96MF4 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC14.7□□□□□ -0.06
CCDC140Q96MF4 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CCDC140Q96MF4 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CCDC140Q96MF4 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
CCDC140Q96MF4 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC14.69□□□□□ -0.06
CCDC140Q96MF4 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
CCDC140Q96MF4 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
CCDC140Q96MF4 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
CCDC140Q96MF4 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
CCDC140Q96MF4 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC14.69□□□□□ -0.06
CCDC140Q96MF4 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
CCDC140Q96MF4 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
CCDC140Q96MF4 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
CCDC140Q96MF4 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
CCDC140Q96MF4 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC14.69□□□□□ -0.06
CCDC140Q96MF4 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
CCDC140Q96MF4 SNORA78-201ENST00000459373 127 ntBASIC14.69□□□□□ -0.06
CCDC140Q96MF4 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC14.69□□□□□ -0.06
CCDC140Q96MF4 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC14.69□□□□□ -0.06
CCDC140Q96MF4 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC14.69□□□□□ -0.06
CCDC140Q96MF4 DHDH-203ENST00000522614 776 ntTSL 5 BASIC14.69□□□□□ -0.06
CCDC140Q96MF4 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC14.69□□□□□ -0.06
CCDC140Q96MF4 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC14.69□□□□□ -0.06
CCDC140Q96MF4 DET1-205ENST00000558413 583 ntTSL 4 BASIC14.69□□□□□ -0.06
CCDC140Q96MF4 MIR4785-201ENST00000585005 73 ntBASIC14.69□□□□□ -0.06
CCDC140Q96MF4 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC14.69□□□□□ -0.06
CCDC140Q96MF4 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC14.69□□□□□ -0.06
CCDC140Q96MF4 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC14.69□□□□□ -0.06
CCDC140Q96MF4 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC14.69□□□□□ -0.06
CCDC140Q96MF4 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC14.69□□□□□ -0.06
CCDC140Q96MF4 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
CCDC140Q96MF4 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC14.69□□□□□ -0.06
CCDC140Q96MF4 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
CCDC140Q96MF4 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
CCDC140Q96MF4 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
CCDC140Q96MF4 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
CCDC140Q96MF4 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
CCDC140Q96MF4 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC14.69□□□□□ -0.06
CCDC140Q96MF4 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC14.69□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms