Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
CCDC28AQ8IWP9 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
CCDC28AQ8IWP9 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
CCDC28AQ8IWP9 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC15.88■□□□□ 0.13
CCDC28AQ8IWP9 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC15.88■□□□□ 0.13
CCDC28AQ8IWP9 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
CCDC28AQ8IWP9 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
CCDC28AQ8IWP9 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CCDC28AQ8IWP9 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC15.88■□□□□ 0.13
CCDC28AQ8IWP9 MYB-242ENST00000618728 3545 ntTSL 5 BASIC15.88■□□□□ 0.13
CCDC28AQ8IWP9 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
CCDC28AQ8IWP9 AC008406.3-201ENST00000620001 1374 ntBASIC15.87■□□□□ 0.13
CCDC28AQ8IWP9 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
CCDC28AQ8IWP9 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
CCDC28AQ8IWP9 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC15.87■□□□□ 0.13
CCDC28AQ8IWP9 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC15.87■□□□□ 0.13
CCDC28AQ8IWP9 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
CCDC28AQ8IWP9 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
CCDC28AQ8IWP9 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
CCDC28AQ8IWP9 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC15.87■□□□□ 0.13
CCDC28AQ8IWP9 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
CCDC28AQ8IWP9 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
CCDC28AQ8IWP9 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC15.87■□□□□ 0.13
CCDC28AQ8IWP9 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
CCDC28AQ8IWP9 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
CCDC28AQ8IWP9 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
CCDC28AQ8IWP9 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC15.87■□□□□ 0.13
CCDC28AQ8IWP9 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
CCDC28AQ8IWP9 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
CCDC28AQ8IWP9 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC15.87■□□□□ 0.13
CCDC28AQ8IWP9 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC15.87■□□□□ 0.13
CCDC28AQ8IWP9 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
CCDC28AQ8IWP9 HES6-206ENST00000409574 738 ntTSL 2 BASIC15.87■□□□□ 0.13
CCDC28AQ8IWP9 PTCHD3P2-201ENST00000424937 1205 ntBASIC15.87■□□□□ 0.13
CCDC28AQ8IWP9 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC15.87■□□□□ 0.13
CCDC28AQ8IWP9 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
CCDC28AQ8IWP9 MIR4466-201ENST00000606121 54 ntBASIC15.87■□□□□ 0.13
CCDC28AQ8IWP9 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
CCDC28AQ8IWP9 SF1-220ENST00000626028 704 ntTSL 2 BASIC15.87■□□□□ 0.13
CCDC28AQ8IWP9 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
CCDC28AQ8IWP9 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC15.87■□□□□ 0.13
CCDC28AQ8IWP9 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC15.87■□□□□ 0.13
CCDC28AQ8IWP9 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
CCDC28AQ8IWP9 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC15.87■□□□□ 0.13
CCDC28AQ8IWP9 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
CCDC28AQ8IWP9 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
CCDC28AQ8IWP9 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC15.87■□□□□ 0.13
CCDC28AQ8IWP9 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC15.87■□□□□ 0.13
CCDC28AQ8IWP9 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
CCDC28AQ8IWP9 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC15.87■□□□□ 0.13
CCDC28AQ8IWP9 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
CCDC28AQ8IWP9 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC15.87■□□□□ 0.13
CCDC28AQ8IWP9 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC15.87■□□□□ 0.13
CCDC28AQ8IWP9 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC15.86■□□□□ 0.13
CCDC28AQ8IWP9 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC15.86■□□□□ 0.13
CCDC28AQ8IWP9 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC15.86■□□□□ 0.13
CCDC28AQ8IWP9 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
CCDC28AQ8IWP9 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC15.86■□□□□ 0.13
CCDC28AQ8IWP9 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
CCDC28AQ8IWP9 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
CCDC28AQ8IWP9 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
CCDC28AQ8IWP9 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
CCDC28AQ8IWP9 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
CCDC28AQ8IWP9 ABR-203ENST00000536794 2213 ntTSL 2 BASIC15.86■□□□□ 0.13
CCDC28AQ8IWP9 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
CCDC28AQ8IWP9 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC15.86■□□□□ 0.13
CCDC28AQ8IWP9 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
CCDC28AQ8IWP9 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC15.86■□□□□ 0.13
CCDC28AQ8IWP9 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
CCDC28AQ8IWP9 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC15.86■□□□□ 0.13
CCDC28AQ8IWP9 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
CCDC28AQ8IWP9 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
CCDC28AQ8IWP9 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
CCDC28AQ8IWP9 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
CCDC28AQ8IWP9 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
CCDC28AQ8IWP9 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
CCDC28AQ8IWP9 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
CCDC28AQ8IWP9 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
CCDC28AQ8IWP9 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
CCDC28AQ8IWP9 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC15.86■□□□□ 0.13
CCDC28AQ8IWP9 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
CCDC28AQ8IWP9 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC15.86■□□□□ 0.13
CCDC28AQ8IWP9 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC15.86■□□□□ 0.13
CCDC28AQ8IWP9 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
CCDC28AQ8IWP9 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC15.86■□□□□ 0.13
CCDC28AQ8IWP9 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
CCDC28AQ8IWP9 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
CCDC28AQ8IWP9 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
CCDC28AQ8IWP9 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
CCDC28AQ8IWP9 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
CCDC28AQ8IWP9 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
CCDC28AQ8IWP9 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
CCDC28AQ8IWP9 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC15.86■□□□□ 0.13
CCDC28AQ8IWP9 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
CCDC28AQ8IWP9 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC15.85■□□□□ 0.13
CCDC28AQ8IWP9 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
CCDC28AQ8IWP9 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC15.85■□□□□ 0.13
CCDC28AQ8IWP9 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
CCDC28AQ8IWP9 LEMD3-201ENST00000308330 4764 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
CCDC28AQ8IWP9 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms