Protein–RNA interactions for Protein: Q5TC82

RC3H1, Roquin-1, humanhuman

Known RBP Predictions only

Length 1,133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1Q5TC82 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
RC3H1Q5TC82 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
RC3H1Q5TC82 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC23.95■■□□□ 1.42
RC3H1Q5TC82 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC23.95■■□□□ 1.42
RC3H1Q5TC82 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
RC3H1Q5TC82 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
RC3H1Q5TC82 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC23.95■■□□□ 1.42
RC3H1Q5TC82 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC23.95■■□□□ 1.42
RC3H1Q5TC82 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC23.95■■□□□ 1.42
RC3H1Q5TC82 CALM1-205ENST00000553542 877 ntTSL 5 BASIC23.95■■□□□ 1.42
RC3H1Q5TC82 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC23.95■■□□□ 1.42
RC3H1Q5TC82 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC23.95■■□□□ 1.42
RC3H1Q5TC82 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC23.95■■□□□ 1.42
RC3H1Q5TC82 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC23.95■■□□□ 1.42
RC3H1Q5TC82 PALM-208ENST00000592155 2272 ntTSL 4 BASIC23.95■■□□□ 1.42
RC3H1Q5TC82 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC23.95■■□□□ 1.42
RC3H1Q5TC82 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
RC3H1Q5TC82 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
RC3H1Q5TC82 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
RC3H1Q5TC82 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
RC3H1Q5TC82 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC23.94■■□□□ 1.42
RC3H1Q5TC82 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
RC3H1Q5TC82 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC23.94■■□□□ 1.42
RC3H1Q5TC82 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC23.94■■□□□ 1.42
RC3H1Q5TC82 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC23.94■■□□□ 1.42
RC3H1Q5TC82 AL662844.1-201ENST00000546340 181 ntBASIC23.94■■□□□ 1.42
RC3H1Q5TC82 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC23.94■■□□□ 1.42
RC3H1Q5TC82 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC23.94■■□□□ 1.42
RC3H1Q5TC82 AC005332.3-201ENST00000589904 676 ntBASIC23.94■■□□□ 1.42
RC3H1Q5TC82 TK1-205ENST00000590862 642 ntTSL 3 BASIC23.94■■□□□ 1.42
RC3H1Q5TC82 AL390719.2-201ENST00000606993 987 ntBASIC23.94■■□□□ 1.42
RC3H1Q5TC82 AC010240.3-201ENST00000607688 395 ntBASIC23.94■■□□□ 1.42
RC3H1Q5TC82 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC23.94■■□□□ 1.42
RC3H1Q5TC82 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
RC3H1Q5TC82 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
RC3H1Q5TC82 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC23.94■■□□□ 1.42
RC3H1Q5TC82 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC23.93■■□□□ 1.42
RC3H1Q5TC82 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC23.93■■□□□ 1.42
RC3H1Q5TC82 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC23.93■■□□□ 1.42
RC3H1Q5TC82 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
RC3H1Q5TC82 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC23.93■■□□□ 1.42
RC3H1Q5TC82 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
RC3H1Q5TC82 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
RC3H1Q5TC82 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC23.93■■□□□ 1.42
RC3H1Q5TC82 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
RC3H1Q5TC82 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC23.93■■□□□ 1.42
RC3H1Q5TC82 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC23.93■■□□□ 1.42
RC3H1Q5TC82 KRT18P23-201ENST00000435622 1283 ntBASIC23.93■■□□□ 1.42
RC3H1Q5TC82 AC104819.1-201ENST00000504587 486 ntBASIC23.93■■□□□ 1.42
RC3H1Q5TC82 CALM3-211ENST00000598871 561 ntTSL 4 BASIC23.93■■□□□ 1.42
RC3H1Q5TC82 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
RC3H1Q5TC82 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
RC3H1Q5TC82 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
RC3H1Q5TC82 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC23.93■■□□□ 1.42
RC3H1Q5TC82 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
RC3H1Q5TC82 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC23.92■■□□□ 1.42
RC3H1Q5TC82 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
RC3H1Q5TC82 AC099778.1-201ENST00000568593 1911 ntBASIC23.92■■□□□ 1.42
RC3H1Q5TC82 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
RC3H1Q5TC82 UBC-206ENST00000538617 1303 ntTSL 5 BASIC23.92■■□□□ 1.42
RC3H1Q5TC82 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC23.92■■□□□ 1.42
RC3H1Q5TC82 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
RC3H1Q5TC82 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
RC3H1Q5TC82 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC23.92■■□□□ 1.42
RC3H1Q5TC82 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC23.92■■□□□ 1.42
RC3H1Q5TC82 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC23.92■■□□□ 1.42
RC3H1Q5TC82 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC23.92■■□□□ 1.42
RC3H1Q5TC82 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
RC3H1Q5TC82 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC23.92■■□□□ 1.42
RC3H1Q5TC82 TPM1-218ENST00000559281 851 ntTSL 5 BASIC23.92■■□□□ 1.42
RC3H1Q5TC82 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
RC3H1Q5TC82 AL121912.1-201ENST00000603683 238 ntBASIC23.92■■□□□ 1.42
RC3H1Q5TC82 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
RC3H1Q5TC82 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
RC3H1Q5TC82 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC23.92■■□□□ 1.42
RC3H1Q5TC82 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC23.92■■□□□ 1.42
RC3H1Q5TC82 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC23.92■■□□□ 1.42
RC3H1Q5TC82 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC23.92■■□□□ 1.42
RC3H1Q5TC82 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
RC3H1Q5TC82 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC23.91■■□□□ 1.42
RC3H1Q5TC82 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC23.91■■□□□ 1.42
RC3H1Q5TC82 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC23.91■■□□□ 1.42
RC3H1Q5TC82 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC23.91■■□□□ 1.42
RC3H1Q5TC82 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC23.91■■□□□ 1.42
RC3H1Q5TC82 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
RC3H1Q5TC82 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC23.91■■□□□ 1.42
RC3H1Q5TC82 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
RC3H1Q5TC82 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
RC3H1Q5TC82 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
RC3H1Q5TC82 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC23.91■■□□□ 1.42
RC3H1Q5TC82 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
RC3H1Q5TC82 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC23.91■■□□□ 1.42
RC3H1Q5TC82 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC23.91■■□□□ 1.42
RC3H1Q5TC82 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC23.91■■□□□ 1.42
RC3H1Q5TC82 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
RC3H1Q5TC82 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
RC3H1Q5TC82 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC23.91■■□□□ 1.42
RC3H1Q5TC82 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
RC3H1Q5TC82 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC23.91■■□□□ 1.42
RC3H1Q5TC82 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
Retrieved 100 of 98,524 protein–RNA pairs in 45.8 ms