Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
PTPN4P29074 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC19.07■□□□□ 0.64
PTPN4P29074 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
PTPN4P29074 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
PTPN4P29074 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
PTPN4P29074 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC19.07■□□□□ 0.64
PTPN4P29074 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
PTPN4P29074 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
PTPN4P29074 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
PTPN4P29074 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC19.06■□□□□ 0.64
PTPN4P29074 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC19.06■□□□□ 0.64
PTPN4P29074 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC19.06■□□□□ 0.64
PTPN4P29074 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
PTPN4P29074 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC19.06■□□□□ 0.64
PTPN4P29074 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
PTPN4P29074 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
PTPN4P29074 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
PTPN4P29074 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
PTPN4P29074 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
PTPN4P29074 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
PTPN4P29074 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
PTPN4P29074 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC19.06■□□□□ 0.64
PTPN4P29074 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC19.06■□□□□ 0.64
PTPN4P29074 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
PTPN4P29074 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC19.06■□□□□ 0.64
PTPN4P29074 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
PTPN4P29074 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC19.06■□□□□ 0.64
PTPN4P29074 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
PTPN4P29074 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
PTPN4P29074 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
PTPN4P29074 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
PTPN4P29074 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
PTPN4P29074 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC19.06■□□□□ 0.64
PTPN4P29074 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
PTPN4P29074 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
PTPN4P29074 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
PTPN4P29074 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
PTPN4P29074 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
PTPN4P29074 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
PTPN4P29074 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
PTPN4P29074 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
PTPN4P29074 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
PTPN4P29074 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
PTPN4P29074 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
PTPN4P29074 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC19.05■□□□□ 0.64
PTPN4P29074 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC19.05■□□□□ 0.64
PTPN4P29074 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC19.05■□□□□ 0.64
PTPN4P29074 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC19.05■□□□□ 0.64
PTPN4P29074 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC19.05■□□□□ 0.64
PTPN4P29074 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
PTPN4P29074 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
PTPN4P29074 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
PTPN4P29074 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
PTPN4P29074 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
PTPN4P29074 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
PTPN4P29074 MOK-233ENST00000524214 1539 ntTSL 2 BASIC19.05■□□□□ 0.64
PTPN4P29074 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC19.05■□□□□ 0.64
PTPN4P29074 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC19.04■□□□□ 0.64
PTPN4P29074 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
PTPN4P29074 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
PTPN4P29074 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC19.04■□□□□ 0.64
PTPN4P29074 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
PTPN4P29074 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
PTPN4P29074 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC19.04■□□□□ 0.64
PTPN4P29074 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
PTPN4P29074 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
PTPN4P29074 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
PTPN4P29074 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
PTPN4P29074 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC19.04■□□□□ 0.64
PTPN4P29074 RER1-204ENST00000378518 522 ntTSL 3 BASIC19.04■□□□□ 0.64
PTPN4P29074 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
PTPN4P29074 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC19.04■□□□□ 0.64
PTPN4P29074 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
PTPN4P29074 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
PTPN4P29074 LY6E-205ENST00000519611 635 ntTSL 3 BASIC19.04■□□□□ 0.64
PTPN4P29074 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC19.04■□□□□ 0.64
PTPN4P29074 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
PTPN4P29074 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
PTPN4P29074 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
PTPN4P29074 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
PTPN4P29074 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
PTPN4P29074 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
PTPN4P29074 AL031598.1-201ENST00000561511 1773 ntBASIC19.04■□□□□ 0.64
PTPN4P29074 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
PTPN4P29074 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
PTPN4P29074 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
PTPN4P29074 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
PTPN4P29074 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
PTPN4P29074 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
PTPN4P29074 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC19.03■□□□□ 0.64
PTPN4P29074 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
PTPN4P29074 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
PTPN4P29074 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
PTPN4P29074 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
PTPN4P29074 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
PTPN4P29074 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
PTPN4P29074 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC19.03■□□□□ 0.64
PTPN4P29074 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
PTPN4P29074 AC133681.1-201ENST00000465482 601 ntBASIC19.03■□□□□ 0.64
PTPN4P29074 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC19.03■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 25.7 ms