Protein–RNA interactions for Protein: Q9Y6N9

USH1C, Harmonin, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH1CQ9Y6N9 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC18.95■□□□□ 0.62
USH1CQ9Y6N9 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
USH1CQ9Y6N9 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC18.95■□□□□ 0.62
USH1CQ9Y6N9 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC18.95■□□□□ 0.62
USH1CQ9Y6N9 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
USH1CQ9Y6N9 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC18.95■□□□□ 0.62
USH1CQ9Y6N9 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
USH1CQ9Y6N9 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
USH1CQ9Y6N9 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
USH1CQ9Y6N9 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
USH1CQ9Y6N9 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
USH1CQ9Y6N9 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC18.95■□□□□ 0.62
USH1CQ9Y6N9 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC18.95■□□□□ 0.62
USH1CQ9Y6N9 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC18.95■□□□□ 0.62
USH1CQ9Y6N9 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC18.95■□□□□ 0.62
USH1CQ9Y6N9 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC18.95■□□□□ 0.62
USH1CQ9Y6N9 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
USH1CQ9Y6N9 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC18.95■□□□□ 0.62
USH1CQ9Y6N9 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC18.95■□□□□ 0.62
USH1CQ9Y6N9 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
USH1CQ9Y6N9 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
USH1CQ9Y6N9 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC18.95■□□□□ 0.62
USH1CQ9Y6N9 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC18.95■□□□□ 0.62
USH1CQ9Y6N9 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
USH1CQ9Y6N9 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
USH1CQ9Y6N9 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC18.95■□□□□ 0.62
USH1CQ9Y6N9 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
USH1CQ9Y6N9 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
USH1CQ9Y6N9 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
USH1CQ9Y6N9 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
USH1CQ9Y6N9 AC116351.2-201ENST00000606540 1585 ntBASIC18.94■□□□□ 0.62
USH1CQ9Y6N9 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
USH1CQ9Y6N9 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
USH1CQ9Y6N9 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
USH1CQ9Y6N9 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC18.94■□□□□ 0.62
USH1CQ9Y6N9 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
USH1CQ9Y6N9 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC18.94■□□□□ 0.62
USH1CQ9Y6N9 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
USH1CQ9Y6N9 C2orf69P4-201ENST00000565394 541 ntBASIC18.94■□□□□ 0.62
USH1CQ9Y6N9 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC18.94■□□□□ 0.62
USH1CQ9Y6N9 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
USH1CQ9Y6N9 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
USH1CQ9Y6N9 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
USH1CQ9Y6N9 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
USH1CQ9Y6N9 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
USH1CQ9Y6N9 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
USH1CQ9Y6N9 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
USH1CQ9Y6N9 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
USH1CQ9Y6N9 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
USH1CQ9Y6N9 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
USH1CQ9Y6N9 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
USH1CQ9Y6N9 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
USH1CQ9Y6N9 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
USH1CQ9Y6N9 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
USH1CQ9Y6N9 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC18.93■□□□□ 0.62
USH1CQ9Y6N9 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
USH1CQ9Y6N9 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
USH1CQ9Y6N9 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
USH1CQ9Y6N9 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
USH1CQ9Y6N9 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
USH1CQ9Y6N9 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
USH1CQ9Y6N9 AL355472.2-201ENST00000422958 438 ntBASIC18.93■□□□□ 0.62
USH1CQ9Y6N9 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC18.93■□□□□ 0.62
USH1CQ9Y6N9 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
USH1CQ9Y6N9 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
USH1CQ9Y6N9 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC18.93■□□□□ 0.62
USH1CQ9Y6N9 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC18.93■□□□□ 0.62
USH1CQ9Y6N9 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
USH1CQ9Y6N9 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC18.93■□□□□ 0.62
USH1CQ9Y6N9 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
USH1CQ9Y6N9 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
USH1CQ9Y6N9 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
USH1CQ9Y6N9 CD276-203ENST00000537340 2439 ntTSL 2 BASIC18.93■□□□□ 0.62
USH1CQ9Y6N9 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
USH1CQ9Y6N9 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
USH1CQ9Y6N9 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
USH1CQ9Y6N9 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC18.93■□□□□ 0.62
USH1CQ9Y6N9 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
USH1CQ9Y6N9 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC18.92■□□□□ 0.62
USH1CQ9Y6N9 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
USH1CQ9Y6N9 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
USH1CQ9Y6N9 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
USH1CQ9Y6N9 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
USH1CQ9Y6N9 AC068338.2-201ENST00000563278 1430 ntBASIC18.92■□□□□ 0.62
USH1CQ9Y6N9 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC18.92■□□□□ 0.62
USH1CQ9Y6N9 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC18.92■□□□□ 0.62
USH1CQ9Y6N9 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
USH1CQ9Y6N9 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
USH1CQ9Y6N9 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC18.92■□□□□ 0.62
USH1CQ9Y6N9 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
USH1CQ9Y6N9 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
USH1CQ9Y6N9 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
USH1CQ9Y6N9 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
USH1CQ9Y6N9 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
USH1CQ9Y6N9 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
USH1CQ9Y6N9 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
USH1CQ9Y6N9 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC18.92■□□□□ 0.62
USH1CQ9Y6N9 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC18.92■□□□□ 0.62
USH1CQ9Y6N9 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC18.92■□□□□ 0.62
USH1CQ9Y6N9 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC18.92■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms