Protein–RNA interactions for Protein: Q9Y239

NOD1, Nucleotide-binding oligomerization domain-containing protein 1, humanhuman

Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NOD1Q9Y239 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC20.97■□□□□ 0.95
NOD1Q9Y239 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC20.97■□□□□ 0.95
NOD1Q9Y239 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC20.97■□□□□ 0.95
NOD1Q9Y239 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
NOD1Q9Y239 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC20.97■□□□□ 0.95
NOD1Q9Y239 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
NOD1Q9Y239 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
NOD1Q9Y239 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
NOD1Q9Y239 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
NOD1Q9Y239 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
NOD1Q9Y239 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
NOD1Q9Y239 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC20.96■□□□□ 0.95
NOD1Q9Y239 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
NOD1Q9Y239 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
NOD1Q9Y239 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
NOD1Q9Y239 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC20.96■□□□□ 0.95
NOD1Q9Y239 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
NOD1Q9Y239 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
NOD1Q9Y239 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC20.96■□□□□ 0.95
NOD1Q9Y239 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC20.96■□□□□ 0.95
NOD1Q9Y239 PRELID1P1-202ENST00000567272 903 ntBASIC20.96■□□□□ 0.95
NOD1Q9Y239 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC20.96■□□□□ 0.95
NOD1Q9Y239 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC20.96■□□□□ 0.95
NOD1Q9Y239 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
NOD1Q9Y239 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
NOD1Q9Y239 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
NOD1Q9Y239 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
NOD1Q9Y239 GABARAPL3-202ENST00000624044 1851 ntBASIC20.96■□□□□ 0.95
NOD1Q9Y239 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC20.96■□□□□ 0.95
NOD1Q9Y239 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
NOD1Q9Y239 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
NOD1Q9Y239 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
NOD1Q9Y239 GPAT2P1-201ENST00000444924 1672 ntBASIC20.96■□□□□ 0.95
NOD1Q9Y239 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.95
NOD1Q9Y239 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC20.95■□□□□ 0.95
NOD1Q9Y239 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC20.95■□□□□ 0.94
NOD1Q9Y239 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC20.95■□□□□ 0.94
NOD1Q9Y239 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
NOD1Q9Y239 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
NOD1Q9Y239 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC20.95■□□□□ 0.94
NOD1Q9Y239 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
NOD1Q9Y239 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
NOD1Q9Y239 AC036111.1-201ENST00000533973 1582 ntBASIC20.95■□□□□ 0.94
NOD1Q9Y239 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
NOD1Q9Y239 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
NOD1Q9Y239 SPDYE13P-201ENST00000445314 798 ntBASIC20.95■□□□□ 0.94
NOD1Q9Y239 AC092597.1-201ENST00000487352 616 ntBASIC20.95■□□□□ 0.94
NOD1Q9Y239 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC20.95■□□□□ 0.94
NOD1Q9Y239 MIR3652-201ENST00000579335 131 ntBASIC20.95■□□□□ 0.94
NOD1Q9Y239 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
NOD1Q9Y239 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
NOD1Q9Y239 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
NOD1Q9Y239 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
NOD1Q9Y239 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC20.95■□□□□ 0.94
NOD1Q9Y239 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
NOD1Q9Y239 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
NOD1Q9Y239 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
NOD1Q9Y239 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC20.94■□□□□ 0.94
NOD1Q9Y239 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
NOD1Q9Y239 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
NOD1Q9Y239 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
NOD1Q9Y239 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
NOD1Q9Y239 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
NOD1Q9Y239 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC20.94■□□□□ 0.94
NOD1Q9Y239 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC20.94■□□□□ 0.94
NOD1Q9Y239 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
NOD1Q9Y239 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC20.94■□□□□ 0.94
NOD1Q9Y239 CNP-204ENST00000472031 1019 ntTSL 2 BASIC20.94■□□□□ 0.94
NOD1Q9Y239 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC20.94■□□□□ 0.94
NOD1Q9Y239 PRR29-207ENST00000580752 458 ntTSL 3 BASIC20.94■□□□□ 0.94
NOD1Q9Y239 AC092329.2-201ENST00000598402 547 ntBASIC20.94■□□□□ 0.94
NOD1Q9Y239 IRF5-214ENST00000613821 595 ntTSL 5 BASIC20.94■□□□□ 0.94
NOD1Q9Y239 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC20.94■□□□□ 0.94
NOD1Q9Y239 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
NOD1Q9Y239 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC20.94■□□□□ 0.94
NOD1Q9Y239 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC20.94■□□□□ 0.94
NOD1Q9Y239 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
NOD1Q9Y239 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
NOD1Q9Y239 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
NOD1Q9Y239 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC20.93■□□□□ 0.94
NOD1Q9Y239 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
NOD1Q9Y239 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
NOD1Q9Y239 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
NOD1Q9Y239 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
NOD1Q9Y239 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
NOD1Q9Y239 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
NOD1Q9Y239 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC20.93■□□□□ 0.94
NOD1Q9Y239 BX276092.5-203ENST00000456199 560 ntBASIC20.93■□□□□ 0.94
NOD1Q9Y239 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC20.93■□□□□ 0.94
NOD1Q9Y239 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
NOD1Q9Y239 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
NOD1Q9Y239 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
NOD1Q9Y239 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC20.93■□□□□ 0.94
NOD1Q9Y239 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
NOD1Q9Y239 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC20.92■□□□□ 0.94
NOD1Q9Y239 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
NOD1Q9Y239 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
NOD1Q9Y239 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
NOD1Q9Y239 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
NOD1Q9Y239 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms