Protein–RNA interactions for Protein: Q9NWW5

CLN6, Ceroid-lipofuscinosis neuronal protein 6, humanhuman

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6Q9NWW5 GXYLT1P2-201ENST00000433312 1230 ntBASIC17.38■□□□□ 0.37
CLN6Q9NWW5 AC011767.1-201ENST00000617410 1153 ntBASIC17.38■□□□□ 0.37
CLN6Q9NWW5 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CLN6Q9NWW5 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CLN6Q9NWW5 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
CLN6Q9NWW5 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC17.38■□□□□ 0.37
CLN6Q9NWW5 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CLN6Q9NWW5 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC17.38■□□□□ 0.37
CLN6Q9NWW5 SDHAP1-207ENST00000440850 2000 ntBASIC17.38■□□□□ 0.37
CLN6Q9NWW5 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CLN6Q9NWW5 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CLN6Q9NWW5 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
CLN6Q9NWW5 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC17.38■□□□□ 0.37
CLN6Q9NWW5 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CLN6Q9NWW5 AC104417.2-201ENST00000562989 1793 ntBASIC17.38■□□□□ 0.37
CLN6Q9NWW5 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC17.38■□□□□ 0.37
CLN6Q9NWW5 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
CLN6Q9NWW5 UBQLN4P1-201ENST00000461599 1801 ntBASIC17.37■□□□□ 0.37
CLN6Q9NWW5 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CLN6Q9NWW5 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CLN6Q9NWW5 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CLN6Q9NWW5 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CLN6Q9NWW5 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CLN6Q9NWW5 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CLN6Q9NWW5 ANKRD18DP-204ENST00000455355 1975 ntBASIC17.37■□□□□ 0.37
CLN6Q9NWW5 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CLN6Q9NWW5 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC17.37■□□□□ 0.37
CLN6Q9NWW5 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CLN6Q9NWW5 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CLN6Q9NWW5 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CLN6Q9NWW5 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CLN6Q9NWW5 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CLN6Q9NWW5 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CLN6Q9NWW5 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC17.37■□□□□ 0.37
CLN6Q9NWW5 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC17.37■□□□□ 0.37
CLN6Q9NWW5 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC17.37■□□□□ 0.37
CLN6Q9NWW5 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC17.37■□□□□ 0.37
CLN6Q9NWW5 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC17.37■□□□□ 0.37
CLN6Q9NWW5 AC087623.3-201ENST00000607047 1098 ntBASIC17.37■□□□□ 0.37
CLN6Q9NWW5 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC17.37■□□□□ 0.37
CLN6Q9NWW5 OR10C1-204ENST00000622521 1039 ntBASIC17.37■□□□□ 0.37
CLN6Q9NWW5 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC17.37■□□□□ 0.37
CLN6Q9NWW5 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CLN6Q9NWW5 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CLN6Q9NWW5 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CLN6Q9NWW5 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC17.37■□□□□ 0.37
CLN6Q9NWW5 AC010980.2-201ENST00000587099 1412 ntBASIC17.37■□□□□ 0.37
CLN6Q9NWW5 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CLN6Q9NWW5 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC17.37■□□□□ 0.37
CLN6Q9NWW5 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
CLN6Q9NWW5 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC17.37■□□□□ 0.37
CLN6Q9NWW5 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
CLN6Q9NWW5 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
CLN6Q9NWW5 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
CLN6Q9NWW5 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CLN6Q9NWW5 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CLN6Q9NWW5 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
CLN6Q9NWW5 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
CLN6Q9NWW5 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
CLN6Q9NWW5 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
CLN6Q9NWW5 ANO7L1-203ENST00000602586 1720 ntBASIC17.36■□□□□ 0.37
CLN6Q9NWW5 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CLN6Q9NWW5 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC17.36■□□□□ 0.37
CLN6Q9NWW5 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
CLN6Q9NWW5 MADD-208ENST00000405573 1823 ntTSL 5 BASIC17.36■□□□□ 0.37
CLN6Q9NWW5 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CLN6Q9NWW5 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
CLN6Q9NWW5 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC17.36■□□□□ 0.37
CLN6Q9NWW5 APTR-203ENST00000430801 583 ntTSL 5 BASIC17.36■□□□□ 0.37
CLN6Q9NWW5 KRT18P5-201ENST00000436075 1291 ntBASIC17.36■□□□□ 0.37
CLN6Q9NWW5 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CLN6Q9NWW5 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC17.36■□□□□ 0.37
CLN6Q9NWW5 AC231657.2-201ENST00000624556 255 ntBASIC17.36■□□□□ 0.37
CLN6Q9NWW5 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC17.36■□□□□ 0.37
CLN6Q9NWW5 PARP1-210ENST00000629232 477 ntTSL 5 BASIC17.36■□□□□ 0.37
CLN6Q9NWW5 ABALON-201ENST00000629058 1903 ntBASIC17.36■□□□□ 0.37
CLN6Q9NWW5 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
CLN6Q9NWW5 NXN-202ENST00000537628 1340 ntTSL 3 BASIC17.36■□□□□ 0.37
CLN6Q9NWW5 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC17.36■□□□□ 0.37
CLN6Q9NWW5 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC17.36■□□□□ 0.37
CLN6Q9NWW5 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
CLN6Q9NWW5 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CLN6Q9NWW5 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC17.36■□□□□ 0.37
CLN6Q9NWW5 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC17.36■□□□□ 0.37
CLN6Q9NWW5 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC17.36■□□□□ 0.37
CLN6Q9NWW5 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
CLN6Q9NWW5 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC17.36■□□□□ 0.37
CLN6Q9NWW5 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
CLN6Q9NWW5 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC17.36■□□□□ 0.37
CLN6Q9NWW5 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC17.36■□□□□ 0.37
CLN6Q9NWW5 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
CLN6Q9NWW5 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CLN6Q9NWW5 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CLN6Q9NWW5 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CLN6Q9NWW5 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC17.36■□□□□ 0.37
CLN6Q9NWW5 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CLN6Q9NWW5 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
CLN6Q9NWW5 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
CLN6Q9NWW5 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CLN6Q9NWW5 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 49.1 ms