Protein–RNA interactions for Protein: Q9NTJ3

SMC4, Structural maintenance of chromosomes protein 4, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4Q9NTJ3 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
SMC4Q9NTJ3 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
SMC4Q9NTJ3 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC24.44■■□□□ 1.5
SMC4Q9NTJ3 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC24.44■■□□□ 1.5
SMC4Q9NTJ3 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC24.44■■□□□ 1.5
SMC4Q9NTJ3 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
SMC4Q9NTJ3 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC24.44■■□□□ 1.5
SMC4Q9NTJ3 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC24.44■■□□□ 1.5
SMC4Q9NTJ3 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC24.43■■□□□ 1.5
SMC4Q9NTJ3 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC24.43■■□□□ 1.5
SMC4Q9NTJ3 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC24.43■■□□□ 1.5
SMC4Q9NTJ3 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC24.43■■□□□ 1.5
SMC4Q9NTJ3 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
SMC4Q9NTJ3 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC24.43■■□□□ 1.5
SMC4Q9NTJ3 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC24.43■■□□□ 1.5
SMC4Q9NTJ3 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC24.43■■□□□ 1.5
SMC4Q9NTJ3 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
SMC4Q9NTJ3 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
SMC4Q9NTJ3 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC24.43■■□□□ 1.5
SMC4Q9NTJ3 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
SMC4Q9NTJ3 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC24.43■■□□□ 1.5
SMC4Q9NTJ3 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC24.43■■□□□ 1.5
SMC4Q9NTJ3 AC093827.2-201ENST00000512654 315 ntBASIC24.43■■□□□ 1.5
SMC4Q9NTJ3 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC24.43■■□□□ 1.5
SMC4Q9NTJ3 AP000692.2-201ENST00000608391 879 ntBASIC24.43■■□□□ 1.5
SMC4Q9NTJ3 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC24.43■■□□□ 1.5
SMC4Q9NTJ3 AC066615.1-201ENST00000640911 628 ntBASIC24.43■■□□□ 1.5
SMC4Q9NTJ3 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
SMC4Q9NTJ3 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC24.43■■□□□ 1.5
SMC4Q9NTJ3 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC24.43■■□□□ 1.5
SMC4Q9NTJ3 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC24.43■■□□□ 1.5
SMC4Q9NTJ3 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC24.43■■□□□ 1.5
SMC4Q9NTJ3 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC24.43■■□□□ 1.5
SMC4Q9NTJ3 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
SMC4Q9NTJ3 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC24.43■■□□□ 1.5
SMC4Q9NTJ3 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
SMC4Q9NTJ3 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC24.42■■□□□ 1.5
SMC4Q9NTJ3 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
SMC4Q9NTJ3 TNXA-203ENST00000507684 2038 ntBASIC24.42■■□□□ 1.5
SMC4Q9NTJ3 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
SMC4Q9NTJ3 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC24.42■■□□□ 1.5
SMC4Q9NTJ3 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC24.42■■□□□ 1.5
SMC4Q9NTJ3 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC24.42■■□□□ 1.5
SMC4Q9NTJ3 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC24.42■■□□□ 1.5
SMC4Q9NTJ3 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC24.42■■□□□ 1.5
SMC4Q9NTJ3 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC24.42■■□□□ 1.5
SMC4Q9NTJ3 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC24.42■■□□□ 1.5
SMC4Q9NTJ3 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC24.42■■□□□ 1.5
SMC4Q9NTJ3 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
SMC4Q9NTJ3 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC24.42■■□□□ 1.5
SMC4Q9NTJ3 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC24.42■■□□□ 1.5
SMC4Q9NTJ3 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
SMC4Q9NTJ3 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC24.42■■□□□ 1.5
SMC4Q9NTJ3 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
SMC4Q9NTJ3 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC24.41■■□□□ 1.5
SMC4Q9NTJ3 AC006333.2-201ENST00000607957 2099 ntBASIC24.41■■□□□ 1.5
SMC4Q9NTJ3 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
SMC4Q9NTJ3 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC24.41■■□□□ 1.5
SMC4Q9NTJ3 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
SMC4Q9NTJ3 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC24.41■■□□□ 1.5
SMC4Q9NTJ3 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC24.41■■□□□ 1.5
SMC4Q9NTJ3 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC24.41■■□□□ 1.5
SMC4Q9NTJ3 DHDH-203ENST00000522614 776 ntTSL 5 BASIC24.41■■□□□ 1.5
SMC4Q9NTJ3 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC24.41■■□□□ 1.5
SMC4Q9NTJ3 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC24.41■■□□□ 1.5
SMC4Q9NTJ3 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC24.41■■□□□ 1.5
SMC4Q9NTJ3 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC24.41■■□□□ 1.5
SMC4Q9NTJ3 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC24.41■■□□□ 1.5
SMC4Q9NTJ3 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
SMC4Q9NTJ3 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
SMC4Q9NTJ3 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC24.4■■□□□ 1.5
SMC4Q9NTJ3 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
SMC4Q9NTJ3 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC24.4■■□□□ 1.5
SMC4Q9NTJ3 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC24.4■■□□□ 1.5
SMC4Q9NTJ3 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC24.4■■□□□ 1.5
SMC4Q9NTJ3 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC24.4■■□□□ 1.5
SMC4Q9NTJ3 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC24.4■■□□□ 1.5
SMC4Q9NTJ3 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
SMC4Q9NTJ3 USP39-202ENST00000409025 1946 ntTSL 5 BASIC24.4■■□□□ 1.5
SMC4Q9NTJ3 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
SMC4Q9NTJ3 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
SMC4Q9NTJ3 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC24.4■■□□□ 1.5
SMC4Q9NTJ3 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC24.4■■□□□ 1.5
SMC4Q9NTJ3 CKBP1-201ENST00000565489 1086 ntBASIC24.4■■□□□ 1.5
SMC4Q9NTJ3 MIR4785-201ENST00000585005 73 ntBASIC24.4■■□□□ 1.5
SMC4Q9NTJ3 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC24.4■■□□□ 1.5
SMC4Q9NTJ3 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC24.4■■□□□ 1.5
SMC4Q9NTJ3 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC24.4■■□□□ 1.5
SMC4Q9NTJ3 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC24.4■■□□□ 1.5
SMC4Q9NTJ3 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC24.4■■□□□ 1.5
SMC4Q9NTJ3 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC24.4■■□□□ 1.5
SMC4Q9NTJ3 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC24.4■■□□□ 1.5
SMC4Q9NTJ3 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
SMC4Q9NTJ3 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC24.39■■□□□ 1.5
SMC4Q9NTJ3 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.5
SMC4Q9NTJ3 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.5
SMC4Q9NTJ3 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.5
SMC4Q9NTJ3 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC24.39■■□□□ 1.5
SMC4Q9NTJ3 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC24.39■■□□□ 1.5
SMC4Q9NTJ3 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC24.39■■□□□ 1.5
Retrieved 100 of 98,524 protein–RNA pairs in 49.5 ms