Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
SKA1Q96BD8 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
SKA1Q96BD8 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.71
SKA1Q96BD8 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC19.52■□□□□ 0.71
SKA1Q96BD8 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC19.52■□□□□ 0.71
SKA1Q96BD8 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SKA1Q96BD8 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
SKA1Q96BD8 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC19.51■□□□□ 0.71
SKA1Q96BD8 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC19.51■□□□□ 0.71
SKA1Q96BD8 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
SKA1Q96BD8 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
SKA1Q96BD8 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC19.51■□□□□ 0.71
SKA1Q96BD8 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC19.51■□□□□ 0.71
SKA1Q96BD8 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC19.51■□□□□ 0.71
SKA1Q96BD8 YBX1P10-201ENST00000444752 975 ntBASIC19.51■□□□□ 0.71
SKA1Q96BD8 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
SKA1Q96BD8 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC19.51■□□□□ 0.71
SKA1Q96BD8 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC19.51■□□□□ 0.71
SKA1Q96BD8 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC19.51■□□□□ 0.71
SKA1Q96BD8 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC19.51■□□□□ 0.71
SKA1Q96BD8 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC19.51■□□□□ 0.71
SKA1Q96BD8 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SKA1Q96BD8 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
SKA1Q96BD8 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
SKA1Q96BD8 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC19.51■□□□□ 0.71
SKA1Q96BD8 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC19.51■□□□□ 0.71
SKA1Q96BD8 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
SKA1Q96BD8 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC19.51■□□□□ 0.71
SKA1Q96BD8 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
SKA1Q96BD8 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
SKA1Q96BD8 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC19.5■□□□□ 0.71
SKA1Q96BD8 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
SKA1Q96BD8 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SKA1Q96BD8 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SKA1Q96BD8 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC19.5■□□□□ 0.71
SKA1Q96BD8 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SKA1Q96BD8 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC19.5■□□□□ 0.71
SKA1Q96BD8 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC19.5■□□□□ 0.71
SKA1Q96BD8 AC113347.1-201ENST00000413321 391 ntBASIC19.5■□□□□ 0.71
SKA1Q96BD8 AL137013.1-201ENST00000432946 1228 ntBASIC19.5■□□□□ 0.71
SKA1Q96BD8 TUBB8P6-201ENST00000436895 1288 ntBASIC19.5■□□□□ 0.71
SKA1Q96BD8 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC19.5■□□□□ 0.71
SKA1Q96BD8 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC19.5■□□□□ 0.71
SKA1Q96BD8 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC19.5■□□□□ 0.71
SKA1Q96BD8 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
SKA1Q96BD8 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC19.5■□□□□ 0.71
SKA1Q96BD8 C1QL1P1-201ENST00000568105 661 ntBASIC19.5■□□□□ 0.71
SKA1Q96BD8 RMI2-205ENST00000576027 818 ntTSL 2 BASIC19.5■□□□□ 0.71
SKA1Q96BD8 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC19.5■□□□□ 0.71
SKA1Q96BD8 AL445675.2-201ENST00000620291 557 ntBASIC19.5■□□□□ 0.71
SKA1Q96BD8 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SKA1Q96BD8 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
SKA1Q96BD8 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SKA1Q96BD8 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC19.5■□□□□ 0.71
SKA1Q96BD8 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC19.5■□□□□ 0.71
SKA1Q96BD8 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SKA1Q96BD8 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC19.5■□□□□ 0.71
SKA1Q96BD8 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SKA1Q96BD8 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SKA1Q96BD8 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC19.49■□□□□ 0.71
SKA1Q96BD8 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
SKA1Q96BD8 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
SKA1Q96BD8 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SKA1Q96BD8 ARMC10P1-201ENST00000313754 855 ntBASIC19.49■□□□□ 0.71
SKA1Q96BD8 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SKA1Q96BD8 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SKA1Q96BD8 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC19.49■□□□□ 0.71
SKA1Q96BD8 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC19.49■□□□□ 0.71
SKA1Q96BD8 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC19.49■□□□□ 0.71
SKA1Q96BD8 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC19.49■□□□□ 0.71
SKA1Q96BD8 CBFB-203ENST00000561924 584 ntTSL 5 BASIC19.49■□□□□ 0.71
SKA1Q96BD8 C2orf69P3-201ENST00000565542 1120 ntBASIC19.49■□□□□ 0.71
SKA1Q96BD8 P4HB-223ENST00000576390 439 ntTSL 4 BASIC19.49■□□□□ 0.71
SKA1Q96BD8 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
SKA1Q96BD8 AC131212.4-201ENST00000623606 975 ntBASIC19.49■□□□□ 0.71
SKA1Q96BD8 CLN6-221ENST00000637494 765 ntTSL 5 BASIC19.49■□□□□ 0.71
SKA1Q96BD8 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC19.49■□□□□ 0.71
SKA1Q96BD8 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
SKA1Q96BD8 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SKA1Q96BD8 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SKA1Q96BD8 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
SKA1Q96BD8 AC116351.2-201ENST00000606540 1585 ntBASIC19.49■□□□□ 0.71
SKA1Q96BD8 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC19.48■□□□□ 0.71
SKA1Q96BD8 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC19.48■□□□□ 0.71
SKA1Q96BD8 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SKA1Q96BD8 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SKA1Q96BD8 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
SKA1Q96BD8 AC005521.1-201ENST00000393351 872 ntBASIC19.48■□□□□ 0.71
SKA1Q96BD8 CRAT-202ENST00000393384 973 ntTSL 2 BASIC19.48■□□□□ 0.71
SKA1Q96BD8 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC19.48■□□□□ 0.71
SKA1Q96BD8 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SKA1Q96BD8 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC19.48■□□□□ 0.71
SKA1Q96BD8 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC19.48■□□□□ 0.71
SKA1Q96BD8 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC19.48■□□□□ 0.71
SKA1Q96BD8 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC19.48■□□□□ 0.71
SKA1Q96BD8 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC19.48■□□□□ 0.71
SKA1Q96BD8 NT5C-211ENST00000582170 653 ntTSL 3 BASIC19.48■□□□□ 0.71
SKA1Q96BD8 DGCR10-201ENST00000609839 495 ntBASIC19.48■□□□□ 0.71
SKA1Q96BD8 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SKA1Q96BD8 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms