Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
ATG4AQ8WYN0 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
ATG4AQ8WYN0 GOLGA6L5P-202ENST00000515341 1828 ntBASIC19.74■□□□□ 0.75
ATG4AQ8WYN0 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
ATG4AQ8WYN0 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC19.74■□□□□ 0.75
ATG4AQ8WYN0 AC018470.1-201ENST00000624790 3129 ntBASIC19.74■□□□□ 0.75
ATG4AQ8WYN0 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
ATG4AQ8WYN0 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
ATG4AQ8WYN0 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
ATG4AQ8WYN0 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
ATG4AQ8WYN0 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC19.74■□□□□ 0.75
ATG4AQ8WYN0 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
ATG4AQ8WYN0 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
ATG4AQ8WYN0 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC19.74■□□□□ 0.75
ATG4AQ8WYN0 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
ATG4AQ8WYN0 AL355802.2-201ENST00000402069 882 ntBASIC19.74■□□□□ 0.75
ATG4AQ8WYN0 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC19.74■□□□□ 0.75
ATG4AQ8WYN0 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC19.74■□□□□ 0.75
ATG4AQ8WYN0 AC008403.3-201ENST00000598924 454 ntBASIC19.74■□□□□ 0.75
ATG4AQ8WYN0 HLA-A-209ENST00000638375 975 ntBASIC19.74■□□□□ 0.75
ATG4AQ8WYN0 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
ATG4AQ8WYN0 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
ATG4AQ8WYN0 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
ATG4AQ8WYN0 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC19.74■□□□□ 0.75
ATG4AQ8WYN0 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
ATG4AQ8WYN0 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
ATG4AQ8WYN0 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
ATG4AQ8WYN0 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
ATG4AQ8WYN0 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC19.74■□□□□ 0.75
ATG4AQ8WYN0 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
ATG4AQ8WYN0 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
ATG4AQ8WYN0 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
ATG4AQ8WYN0 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC19.73■□□□□ 0.75
ATG4AQ8WYN0 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
ATG4AQ8WYN0 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC19.73■□□□□ 0.75
ATG4AQ8WYN0 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
ATG4AQ8WYN0 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
ATG4AQ8WYN0 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC19.73■□□□□ 0.75
ATG4AQ8WYN0 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
ATG4AQ8WYN0 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
ATG4AQ8WYN0 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC19.73■□□□□ 0.75
ATG4AQ8WYN0 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
ATG4AQ8WYN0 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
ATG4AQ8WYN0 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC19.73■□□□□ 0.75
ATG4AQ8WYN0 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
ATG4AQ8WYN0 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
ATG4AQ8WYN0 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
ATG4AQ8WYN0 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC19.73■□□□□ 0.75
ATG4AQ8WYN0 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
ATG4AQ8WYN0 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
ATG4AQ8WYN0 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
ATG4AQ8WYN0 KLF13-207ENST00000560473 489 ntTSL 3 BASIC19.73■□□□□ 0.75
ATG4AQ8WYN0 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC19.73■□□□□ 0.75
ATG4AQ8WYN0 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
ATG4AQ8WYN0 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC19.73■□□□□ 0.75
ATG4AQ8WYN0 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC19.73■□□□□ 0.75
ATG4AQ8WYN0 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
ATG4AQ8WYN0 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC19.73■□□□□ 0.75
ATG4AQ8WYN0 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
ATG4AQ8WYN0 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
ATG4AQ8WYN0 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
ATG4AQ8WYN0 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
ATG4AQ8WYN0 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
ATG4AQ8WYN0 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
ATG4AQ8WYN0 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
ATG4AQ8WYN0 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC19.73■□□□□ 0.75
ATG4AQ8WYN0 NBPF21P-201ENST00000425093 1451 ntBASIC19.73■□□□□ 0.75
ATG4AQ8WYN0 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC19.73■□□□□ 0.75
ATG4AQ8WYN0 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
ATG4AQ8WYN0 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC19.72■□□□□ 0.75
ATG4AQ8WYN0 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
ATG4AQ8WYN0 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
ATG4AQ8WYN0 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC19.72■□□□□ 0.75
ATG4AQ8WYN0 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
ATG4AQ8WYN0 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
ATG4AQ8WYN0 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
ATG4AQ8WYN0 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
ATG4AQ8WYN0 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC19.72■□□□□ 0.75
ATG4AQ8WYN0 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
ATG4AQ8WYN0 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC19.72■□□□□ 0.75
ATG4AQ8WYN0 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC19.72■□□□□ 0.75
ATG4AQ8WYN0 ANO7L1-203ENST00000602586 1720 ntBASIC19.72■□□□□ 0.75
ATG4AQ8WYN0 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
ATG4AQ8WYN0 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
ATG4AQ8WYN0 AC135050.7-201ENST00000624508 2218 ntBASIC19.72■□□□□ 0.75
ATG4AQ8WYN0 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC19.72■□□□□ 0.75
ATG4AQ8WYN0 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
ATG4AQ8WYN0 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
ATG4AQ8WYN0 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC19.72■□□□□ 0.75
ATG4AQ8WYN0 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
ATG4AQ8WYN0 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC19.71■□□□□ 0.75
ATG4AQ8WYN0 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
ATG4AQ8WYN0 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
ATG4AQ8WYN0 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
ATG4AQ8WYN0 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
ATG4AQ8WYN0 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
ATG4AQ8WYN0 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC19.71■□□□□ 0.75
ATG4AQ8WYN0 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
ATG4AQ8WYN0 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
ATG4AQ8WYN0 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC19.71■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms