Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
ZNF540Q8NDQ6 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
ZNF540Q8NDQ6 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
ZNF540Q8NDQ6 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC17.63■□□□□ 0.41
ZNF540Q8NDQ6 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC17.63■□□□□ 0.41
ZNF540Q8NDQ6 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC17.63■□□□□ 0.41
ZNF540Q8NDQ6 KLF13-207ENST00000560473 489 ntTSL 3 BASIC17.63■□□□□ 0.41
ZNF540Q8NDQ6 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC17.63■□□□□ 0.41
ZNF540Q8NDQ6 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC17.63■□□□□ 0.41
ZNF540Q8NDQ6 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
ZNF540Q8NDQ6 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
ZNF540Q8NDQ6 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC17.63■□□□□ 0.41
ZNF540Q8NDQ6 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC17.63■□□□□ 0.41
ZNF540Q8NDQ6 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
ZNF540Q8NDQ6 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
ZNF540Q8NDQ6 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
ZNF540Q8NDQ6 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
ZNF540Q8NDQ6 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
ZNF540Q8NDQ6 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC17.63■□□□□ 0.41
ZNF540Q8NDQ6 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
ZNF540Q8NDQ6 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
ZNF540Q8NDQ6 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
ZNF540Q8NDQ6 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
ZNF540Q8NDQ6 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC17.63■□□□□ 0.41
ZNF540Q8NDQ6 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
ZNF540Q8NDQ6 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC17.63■□□□□ 0.41
ZNF540Q8NDQ6 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
ZNF540Q8NDQ6 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
ZNF540Q8NDQ6 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC17.62■□□□□ 0.41
ZNF540Q8NDQ6 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
ZNF540Q8NDQ6 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
ZNF540Q8NDQ6 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
ZNF540Q8NDQ6 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
ZNF540Q8NDQ6 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
ZNF540Q8NDQ6 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
ZNF540Q8NDQ6 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
ZNF540Q8NDQ6 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
ZNF540Q8NDQ6 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
ZNF540Q8NDQ6 MIPEPP3-201ENST00000412105 444 ntBASIC17.62■□□□□ 0.41
ZNF540Q8NDQ6 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
ZNF540Q8NDQ6 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC17.62■□□□□ 0.41
ZNF540Q8NDQ6 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC17.62■□□□□ 0.41
ZNF540Q8NDQ6 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
ZNF540Q8NDQ6 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC17.62■□□□□ 0.41
ZNF540Q8NDQ6 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
ZNF540Q8NDQ6 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
ZNF540Q8NDQ6 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
ZNF540Q8NDQ6 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
ZNF540Q8NDQ6 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
ZNF540Q8NDQ6 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC17.62■□□□□ 0.41
ZNF540Q8NDQ6 OR6D1P-202ENST00000641007 5290 ntBASIC17.62■□□□□ 0.41
ZNF540Q8NDQ6 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC17.62■□□□□ 0.41
ZNF540Q8NDQ6 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
ZNF540Q8NDQ6 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC17.62■□□□□ 0.41
ZNF540Q8NDQ6 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
ZNF540Q8NDQ6 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
ZNF540Q8NDQ6 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
ZNF540Q8NDQ6 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
ZNF540Q8NDQ6 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
ZNF540Q8NDQ6 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
ZNF540Q8NDQ6 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
ZNF540Q8NDQ6 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC17.61■□□□□ 0.41
ZNF540Q8NDQ6 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC17.61■□□□□ 0.41
ZNF540Q8NDQ6 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC17.61■□□□□ 0.41
ZNF540Q8NDQ6 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC17.61■□□□□ 0.41
ZNF540Q8NDQ6 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
ZNF540Q8NDQ6 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
ZNF540Q8NDQ6 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC17.61■□□□□ 0.41
ZNF540Q8NDQ6 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC17.61■□□□□ 0.41
ZNF540Q8NDQ6 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC17.61■□□□□ 0.41
ZNF540Q8NDQ6 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC17.61■□□□□ 0.41
ZNF540Q8NDQ6 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC17.61■□□□□ 0.41
ZNF540Q8NDQ6 AC092118.2-201ENST00000613495 667 ntBASIC17.61■□□□□ 0.41
ZNF540Q8NDQ6 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC17.61■□□□□ 0.41
ZNF540Q8NDQ6 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
ZNF540Q8NDQ6 CYP21A1P-202ENST00000354927 1481 ntBASIC17.61■□□□□ 0.41
ZNF540Q8NDQ6 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC17.61■□□□□ 0.41
ZNF540Q8NDQ6 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC17.61■□□□□ 0.41
ZNF540Q8NDQ6 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
ZNF540Q8NDQ6 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC17.61■□□□□ 0.41
ZNF540Q8NDQ6 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC17.61■□□□□ 0.41
ZNF540Q8NDQ6 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC17.61■□□□□ 0.41
ZNF540Q8NDQ6 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC17.61■□□□□ 0.41
ZNF540Q8NDQ6 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
ZNF540Q8NDQ6 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
ZNF540Q8NDQ6 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
ZNF540Q8NDQ6 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
ZNF540Q8NDQ6 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
ZNF540Q8NDQ6 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
ZNF540Q8NDQ6 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC17.61■□□□□ 0.41
ZNF540Q8NDQ6 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC17.6■□□□□ 0.41
ZNF540Q8NDQ6 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
ZNF540Q8NDQ6 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
ZNF540Q8NDQ6 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
ZNF540Q8NDQ6 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
ZNF540Q8NDQ6 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
ZNF540Q8NDQ6 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC17.6■□□□□ 0.41
ZNF540Q8NDQ6 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
ZNF540Q8NDQ6 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
ZNF540Q8NDQ6 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms