Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC20.58■□□□□ 0.89
KRT39Q6A163 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
KRT39Q6A163 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
KRT39Q6A163 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC20.58■□□□□ 0.88
KRT39Q6A163 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC20.58■□□□□ 0.88
KRT39Q6A163 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
KRT39Q6A163 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
KRT39Q6A163 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
KRT39Q6A163 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
KRT39Q6A163 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
KRT39Q6A163 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
KRT39Q6A163 TNXA-203ENST00000507684 2038 ntBASIC20.58■□□□□ 0.88
KRT39Q6A163 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC20.58■□□□□ 0.88
KRT39Q6A163 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
KRT39Q6A163 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC20.58■□□□□ 0.88
KRT39Q6A163 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC20.57■□□□□ 0.88
KRT39Q6A163 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
KRT39Q6A163 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
KRT39Q6A163 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
KRT39Q6A163 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC20.57■□□□□ 0.88
KRT39Q6A163 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC20.57■□□□□ 0.88
KRT39Q6A163 USP39-202ENST00000409025 1946 ntTSL 5 BASIC20.57■□□□□ 0.88
KRT39Q6A163 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
KRT39Q6A163 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC20.57■□□□□ 0.88
KRT39Q6A163 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC20.57■□□□□ 0.88
KRT39Q6A163 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
KRT39Q6A163 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC20.57■□□□□ 0.88
KRT39Q6A163 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
KRT39Q6A163 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
KRT39Q6A163 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC20.57■□□□□ 0.88
KRT39Q6A163 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
KRT39Q6A163 AL355355.2-201ENST00000442321 338 ntBASIC20.57■□□□□ 0.88
KRT39Q6A163 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC20.57■□□□□ 0.88
KRT39Q6A163 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC20.57■□□□□ 0.88
KRT39Q6A163 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC20.57■□□□□ 0.88
KRT39Q6A163 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC20.57■□□□□ 0.88
KRT39Q6A163 AP000692.2-201ENST00000608391 879 ntBASIC20.57■□□□□ 0.88
KRT39Q6A163 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
KRT39Q6A163 AC026471.5-201ENST00000615068 467 ntBASIC20.57■□□□□ 0.88
KRT39Q6A163 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
KRT39Q6A163 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
KRT39Q6A163 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
KRT39Q6A163 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
KRT39Q6A163 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC20.57■□□□□ 0.88
KRT39Q6A163 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
KRT39Q6A163 AC006333.2-201ENST00000607957 2099 ntBASIC20.57■□□□□ 0.88
KRT39Q6A163 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
KRT39Q6A163 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
KRT39Q6A163 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC20.56■□□□□ 0.88
KRT39Q6A163 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
KRT39Q6A163 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
KRT39Q6A163 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
KRT39Q6A163 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC20.56■□□□□ 0.88
KRT39Q6A163 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC20.56■□□□□ 0.88
KRT39Q6A163 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC20.56■□□□□ 0.88
KRT39Q6A163 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC20.56■□□□□ 0.88
KRT39Q6A163 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC20.56■□□□□ 0.88
KRT39Q6A163 CKBP1-201ENST00000565489 1086 ntBASIC20.56■□□□□ 0.88
KRT39Q6A163 DGCR10-201ENST00000609839 495 ntBASIC20.56■□□□□ 0.88
KRT39Q6A163 REXO1L10P-201ENST00000615707 1290 ntBASIC20.56■□□□□ 0.88
KRT39Q6A163 REXO1L12P-201ENST00000622156 912 ntBASIC20.56■□□□□ 0.88
KRT39Q6A163 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC20.56■□□□□ 0.88
KRT39Q6A163 DECR2-212ENST00000627716 352 ntTSL 2 BASIC20.56■□□□□ 0.88
KRT39Q6A163 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
KRT39Q6A163 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
KRT39Q6A163 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
KRT39Q6A163 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC20.56■□□□□ 0.88
KRT39Q6A163 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
KRT39Q6A163 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC20.56■□□□□ 0.88
KRT39Q6A163 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC20.56■□□□□ 0.88
KRT39Q6A163 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
KRT39Q6A163 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
KRT39Q6A163 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
KRT39Q6A163 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
KRT39Q6A163 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC20.55■□□□□ 0.88
KRT39Q6A163 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
KRT39Q6A163 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
KRT39Q6A163 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
KRT39Q6A163 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC20.55■□□□□ 0.88
KRT39Q6A163 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
KRT39Q6A163 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC20.55■□□□□ 0.88
KRT39Q6A163 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
KRT39Q6A163 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC20.55■□□□□ 0.88
KRT39Q6A163 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
KRT39Q6A163 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC20.55■□□□□ 0.88
KRT39Q6A163 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC20.55■□□□□ 0.88
KRT39Q6A163 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
KRT39Q6A163 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
KRT39Q6A163 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
KRT39Q6A163 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC20.55■□□□□ 0.88
KRT39Q6A163 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
KRT39Q6A163 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
KRT39Q6A163 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
KRT39Q6A163 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
KRT39Q6A163 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
KRT39Q6A163 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC20.54■□□□□ 0.88
KRT39Q6A163 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC20.54■□□□□ 0.88
KRT39Q6A163 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC20.54■□□□□ 0.88
KRT39Q6A163 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC20.54■□□□□ 0.88
KRT39Q6A163 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 48.3 ms