Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 HLA-A-209ENST00000638375 975 ntBASIC22.1■■□□□ 1.13
CCDC144BQ3MJ40 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC22.1■■□□□ 1.13
CCDC144BQ3MJ40 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC22.1■■□□□ 1.13
CCDC144BQ3MJ40 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC22.1■■□□□ 1.13
CCDC144BQ3MJ40 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
CCDC144BQ3MJ40 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC22.1■■□□□ 1.13
CCDC144BQ3MJ40 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC22.1■■□□□ 1.13
CCDC144BQ3MJ40 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
CCDC144BQ3MJ40 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
CCDC144BQ3MJ40 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC22.09■■□□□ 1.13
CCDC144BQ3MJ40 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
CCDC144BQ3MJ40 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
CCDC144BQ3MJ40 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC22.09■■□□□ 1.13
CCDC144BQ3MJ40 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
CCDC144BQ3MJ40 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC22.09■■□□□ 1.13
CCDC144BQ3MJ40 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
CCDC144BQ3MJ40 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC22.09■■□□□ 1.13
CCDC144BQ3MJ40 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC22.09■■□□□ 1.13
CCDC144BQ3MJ40 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
CCDC144BQ3MJ40 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
CCDC144BQ3MJ40 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
CCDC144BQ3MJ40 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC22.09■■□□□ 1.13
CCDC144BQ3MJ40 AC011298.2-201ENST00000617989 482 ntBASIC22.09■■□□□ 1.13
CCDC144BQ3MJ40 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC22.09■■□□□ 1.13
CCDC144BQ3MJ40 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
CCDC144BQ3MJ40 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC22.09■■□□□ 1.13
CCDC144BQ3MJ40 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC22.08■■□□□ 1.13
CCDC144BQ3MJ40 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC22.08■■□□□ 1.13
CCDC144BQ3MJ40 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
CCDC144BQ3MJ40 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
CCDC144BQ3MJ40 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
CCDC144BQ3MJ40 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC22.08■■□□□ 1.13
CCDC144BQ3MJ40 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
CCDC144BQ3MJ40 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
CCDC144BQ3MJ40 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
CCDC144BQ3MJ40 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
CCDC144BQ3MJ40 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
CCDC144BQ3MJ40 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC22.08■■□□□ 1.13
CCDC144BQ3MJ40 LTBR-211ENST00000543190 785 ntTSL 3 BASIC22.08■■□□□ 1.13
CCDC144BQ3MJ40 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC22.08■■□□□ 1.13
CCDC144BQ3MJ40 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.12
CCDC144BQ3MJ40 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC22.08■■□□□ 1.12
CCDC144BQ3MJ40 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC22.08■■□□□ 1.12
CCDC144BQ3MJ40 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.12
CCDC144BQ3MJ40 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.12
CCDC144BQ3MJ40 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC22.08■■□□□ 1.12
CCDC144BQ3MJ40 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.12
CCDC144BQ3MJ40 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC22.08■■□□□ 1.12
CCDC144BQ3MJ40 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC22.08■■□□□ 1.12
CCDC144BQ3MJ40 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC22.08■■□□□ 1.12
CCDC144BQ3MJ40 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC22.08■■□□□ 1.12
CCDC144BQ3MJ40 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC22.07■■□□□ 1.12
CCDC144BQ3MJ40 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
CCDC144BQ3MJ40 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC22.07■■□□□ 1.12
CCDC144BQ3MJ40 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
CCDC144BQ3MJ40 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC22.07■■□□□ 1.12
CCDC144BQ3MJ40 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC22.07■■□□□ 1.12
CCDC144BQ3MJ40 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC22.07■■□□□ 1.12
CCDC144BQ3MJ40 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC22.07■■□□□ 1.12
CCDC144BQ3MJ40 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC22.07■■□□□ 1.12
CCDC144BQ3MJ40 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC22.07■■□□□ 1.12
CCDC144BQ3MJ40 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC22.07■■□□□ 1.12
CCDC144BQ3MJ40 CYGB-204ENST00000589342 815 ntTSL 3 BASIC22.07■■□□□ 1.12
CCDC144BQ3MJ40 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC22.07■■□□□ 1.12
CCDC144BQ3MJ40 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC22.07■■□□□ 1.12
CCDC144BQ3MJ40 AC026471.1-201ENST00000564629 3026 ntBASIC22.07■■□□□ 1.12
CCDC144BQ3MJ40 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
CCDC144BQ3MJ40 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
CCDC144BQ3MJ40 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC22.07■■□□□ 1.12
CCDC144BQ3MJ40 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
CCDC144BQ3MJ40 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
CCDC144BQ3MJ40 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC22.06■■□□□ 1.12
CCDC144BQ3MJ40 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
CCDC144BQ3MJ40 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC22.06■■□□□ 1.12
CCDC144BQ3MJ40 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC22.06■■□□□ 1.12
CCDC144BQ3MJ40 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
CCDC144BQ3MJ40 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC22.06■■□□□ 1.12
CCDC144BQ3MJ40 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
CCDC144BQ3MJ40 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
CCDC144BQ3MJ40 AC004951.3-201ENST00000418645 1148 ntBASIC22.06■■□□□ 1.12
CCDC144BQ3MJ40 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC22.06■■□□□ 1.12
CCDC144BQ3MJ40 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC22.06■■□□□ 1.12
CCDC144BQ3MJ40 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC22.06■■□□□ 1.12
CCDC144BQ3MJ40 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC22.06■■□□□ 1.12
CCDC144BQ3MJ40 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
CCDC144BQ3MJ40 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC22.06■■□□□ 1.12
CCDC144BQ3MJ40 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC22.06■■□□□ 1.12
CCDC144BQ3MJ40 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
CCDC144BQ3MJ40 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC22.06■■□□□ 1.12
CCDC144BQ3MJ40 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC22.06■■□□□ 1.12
CCDC144BQ3MJ40 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC22.06■■□□□ 1.12
CCDC144BQ3MJ40 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
CCDC144BQ3MJ40 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC22.06■■□□□ 1.12
CCDC144BQ3MJ40 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
CCDC144BQ3MJ40 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
CCDC144BQ3MJ40 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC22.05■■□□□ 1.12
CCDC144BQ3MJ40 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC22.05■■□□□ 1.12
CCDC144BQ3MJ40 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC22.05■■□□□ 1.12
CCDC144BQ3MJ40 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC22.05■■□□□ 1.12
CCDC144BQ3MJ40 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC22.05■■□□□ 1.12
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms