Protein–RNA interactions for Protein: P18887

XRCC1, DNA repair protein XRCC1, humanhuman

Predicted RBP Predictions only

Length 633 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC1P18887 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
XRCC1P18887 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC18.98■□□□□ 0.63
XRCC1P18887 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC18.98■□□□□ 0.63
XRCC1P18887 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
XRCC1P18887 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC18.98■□□□□ 0.63
XRCC1P18887 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC18.98■□□□□ 0.63
XRCC1P18887 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC18.98■□□□□ 0.63
XRCC1P18887 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
XRCC1P18887 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
XRCC1P18887 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
XRCC1P18887 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
XRCC1P18887 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
XRCC1P18887 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
XRCC1P18887 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
XRCC1P18887 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
XRCC1P18887 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
XRCC1P18887 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC18.97■□□□□ 0.63
XRCC1P18887 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
XRCC1P18887 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC18.97■□□□□ 0.63
XRCC1P18887 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC18.97■□□□□ 0.63
XRCC1P18887 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
XRCC1P18887 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
XRCC1P18887 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
XRCC1P18887 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC18.97■□□□□ 0.63
XRCC1P18887 AC026271.3-201ENST00000571884 352 ntBASIC18.97■□□□□ 0.63
XRCC1P18887 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC18.97■□□□□ 0.63
XRCC1P18887 AC131212.4-201ENST00000623606 975 ntBASIC18.97■□□□□ 0.63
XRCC1P18887 HLA-A-209ENST00000638375 975 ntBASIC18.97■□□□□ 0.63
XRCC1P18887 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC18.97■□□□□ 0.63
XRCC1P18887 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
XRCC1P18887 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
XRCC1P18887 LINC01465-201ENST00000408887 1940 ntBASIC18.97■□□□□ 0.63
XRCC1P18887 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
XRCC1P18887 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
XRCC1P18887 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
XRCC1P18887 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC18.97■□□□□ 0.63
XRCC1P18887 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
XRCC1P18887 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
XRCC1P18887 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC18.97■□□□□ 0.63
XRCC1P18887 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
XRCC1P18887 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC18.97■□□□□ 0.63
XRCC1P18887 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
XRCC1P18887 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
XRCC1P18887 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
XRCC1P18887 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
XRCC1P18887 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
XRCC1P18887 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC18.96■□□□□ 0.63
XRCC1P18887 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
XRCC1P18887 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC18.96■□□□□ 0.63
XRCC1P18887 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
XRCC1P18887 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
XRCC1P18887 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC18.96■□□□□ 0.63
XRCC1P18887 UNC93B2-201ENST00000285383 730 ntBASIC18.96■□□□□ 0.63
XRCC1P18887 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
XRCC1P18887 AC004980.1-204ENST00000429707 299 ntBASIC18.96■□□□□ 0.63
XRCC1P18887 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
XRCC1P18887 RBM17P1-201ENST00000453646 1190 ntBASIC18.96■□□□□ 0.63
XRCC1P18887 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC18.96■□□□□ 0.63
XRCC1P18887 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC18.96■□□□□ 0.63
XRCC1P18887 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
XRCC1P18887 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
XRCC1P18887 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
XRCC1P18887 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC18.96■□□□□ 0.63
XRCC1P18887 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC18.96■□□□□ 0.63
XRCC1P18887 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
XRCC1P18887 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
XRCC1P18887 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC18.95■□□□□ 0.62
XRCC1P18887 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
XRCC1P18887 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
XRCC1P18887 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
XRCC1P18887 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
XRCC1P18887 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
XRCC1P18887 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC18.95■□□□□ 0.62
XRCC1P18887 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
XRCC1P18887 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
XRCC1P18887 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
XRCC1P18887 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC18.95■□□□□ 0.62
XRCC1P18887 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
XRCC1P18887 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC18.95■□□□□ 0.62
XRCC1P18887 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC18.95■□□□□ 0.62
XRCC1P18887 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
XRCC1P18887 ABBA01031674.1-201ENST00000635145 728 ntBASIC18.95■□□□□ 0.62
XRCC1P18887 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
XRCC1P18887 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
XRCC1P18887 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
XRCC1P18887 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC18.95■□□□□ 0.62
XRCC1P18887 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
XRCC1P18887 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
XRCC1P18887 FSCN1P1-201ENST00000568912 1481 ntBASIC18.95■□□□□ 0.62
XRCC1P18887 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
XRCC1P18887 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
XRCC1P18887 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC18.95■□□□□ 0.62
XRCC1P18887 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC18.95■□□□□ 0.62
XRCC1P18887 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
XRCC1P18887 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
XRCC1P18887 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
XRCC1P18887 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
XRCC1P18887 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
XRCC1P18887 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
XRCC1P18887 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC18.94■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 19.5 ms