Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 KLF2-202ENST00000592003 564 ntTSL 3 BASIC18.38■□□□□ 0.53
LDLRP01130 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
LDLRP01130 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
LDLRP01130 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC18.38■□□□□ 0.53
LDLRP01130 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
LDLRP01130 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
LDLRP01130 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
LDLRP01130 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
LDLRP01130 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
LDLRP01130 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC18.38■□□□□ 0.53
LDLRP01130 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC18.38■□□□□ 0.53
LDLRP01130 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC18.38■□□□□ 0.53
LDLRP01130 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
LDLRP01130 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
LDLRP01130 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
LDLRP01130 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
LDLRP01130 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC18.38■□□□□ 0.53
LDLRP01130 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
LDLRP01130 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
LDLRP01130 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
LDLRP01130 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
LDLRP01130 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
LDLRP01130 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
LDLRP01130 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
LDLRP01130 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC18.37■□□□□ 0.53
LDLRP01130 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
LDLRP01130 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
LDLRP01130 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
LDLRP01130 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC18.37■□□□□ 0.53
LDLRP01130 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC18.37■□□□□ 0.53
LDLRP01130 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
LDLRP01130 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
LDLRP01130 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC18.37■□□□□ 0.53
LDLRP01130 AC133681.1-201ENST00000465482 601 ntBASIC18.37■□□□□ 0.53
LDLRP01130 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC18.37■□□□□ 0.53
LDLRP01130 TK2-204ENST00000525974 1178 ntTSL 2 BASIC18.37■□□□□ 0.53
LDLRP01130 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC18.37■□□□□ 0.53
LDLRP01130 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
LDLRP01130 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC18.37■□□□□ 0.53
LDLRP01130 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC18.37■□□□□ 0.53
LDLRP01130 KRT8P17-201ENST00000453110 1448 ntBASIC18.37■□□□□ 0.53
LDLRP01130 AL135905.2-201ENST00000584934 1404 ntBASIC18.37■□□□□ 0.53
LDLRP01130 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
LDLRP01130 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
LDLRP01130 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC18.37■□□□□ 0.53
LDLRP01130 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC18.37■□□□□ 0.53
LDLRP01130 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
LDLRP01130 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
LDLRP01130 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
LDLRP01130 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
LDLRP01130 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
LDLRP01130 AC104581.1-202ENST00000635932 2618 ntBASIC18.36■□□□□ 0.53
LDLRP01130 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LDLRP01130 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
LDLRP01130 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LDLRP01130 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LDLRP01130 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
LDLRP01130 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
LDLRP01130 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
LDLRP01130 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC18.36■□□□□ 0.53
LDLRP01130 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LDLRP01130 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LDLRP01130 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC18.36■□□□□ 0.53
LDLRP01130 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC18.36■□□□□ 0.53
LDLRP01130 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC18.36■□□□□ 0.53
LDLRP01130 GCK-205ENST00000437084 1385 ntTSL 5 BASIC18.36■□□□□ 0.53
LDLRP01130 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC18.36■□□□□ 0.53
LDLRP01130 HES2-205ENST00000487437 968 ntTSL 3 BASIC18.36■□□□□ 0.53
LDLRP01130 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LDLRP01130 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
LDLRP01130 NXN-202ENST00000537628 1340 ntTSL 3 BASIC18.36■□□□□ 0.53
LDLRP01130 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC18.36■□□□□ 0.53
LDLRP01130 PTBP1P-201ENST00000554374 1601 ntBASIC18.36■□□□□ 0.53
LDLRP01130 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC18.36■□□□□ 0.53
LDLRP01130 AC087633.2-202ENST00000565166 1439 ntBASIC18.36■□□□□ 0.53
LDLRP01130 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
LDLRP01130 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
LDLRP01130 MTDHP1-201ENST00000605323 784 ntBASIC18.36■□□□□ 0.53
LDLRP01130 AC124016.1-201ENST00000609552 612 ntBASIC18.36■□□□□ 0.53
LDLRP01130 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LDLRP01130 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LDLRP01130 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LDLRP01130 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC18.35■□□□□ 0.53
LDLRP01130 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
LDLRP01130 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LDLRP01130 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC18.35■□□□□ 0.53
LDLRP01130 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
LDLRP01130 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
LDLRP01130 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
LDLRP01130 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
LDLRP01130 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LDLRP01130 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LDLRP01130 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC18.35■□□□□ 0.53
LDLRP01130 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LDLRP01130 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LDLRP01130 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LDLRP01130 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
LDLRP01130 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC18.35■□□□□ 0.53
LDLRP01130 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LDLRP01130 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 49.2 ms