Protein–RNA interactions for Protein: Q9HBX3

SND1-IT1, Uncharacterized protein encoded by SND1-IT1, humanhuman

Predictions only

Length 110 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SND1-IT1Q9HBX3 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
SND1-IT1Q9HBX3 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC12.78□□□□□ -0.36
SND1-IT1Q9HBX3 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
SND1-IT1Q9HBX3 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
SND1-IT1Q9HBX3 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
SND1-IT1Q9HBX3 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
SND1-IT1Q9HBX3 AC013268.1-206ENST00000638368 961 ntBASIC12.78□□□□□ -0.36
SND1-IT1Q9HBX3 AC112229.1-201ENST00000639295 961 ntBASIC12.78□□□□□ -0.36
SND1-IT1Q9HBX3 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
SND1-IT1Q9HBX3 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC12.78□□□□□ -0.36
SND1-IT1Q9HBX3 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC12.78□□□□□ -0.36
SND1-IT1Q9HBX3 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC12.78□□□□□ -0.36
SND1-IT1Q9HBX3 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC12.78□□□□□ -0.36
SND1-IT1Q9HBX3 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
SND1-IT1Q9HBX3 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
SND1-IT1Q9HBX3 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
SND1-IT1Q9HBX3 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
SND1-IT1Q9HBX3 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
SND1-IT1Q9HBX3 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
SND1-IT1Q9HBX3 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC12.78□□□□□ -0.36
SND1-IT1Q9HBX3 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
SND1-IT1Q9HBX3 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC12.78□□□□□ -0.36
SND1-IT1Q9HBX3 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC12.78□□□□□ -0.36
SND1-IT1Q9HBX3 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC12.78□□□□□ -0.36
SND1-IT1Q9HBX3 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC12.78□□□□□ -0.36
SND1-IT1Q9HBX3 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
SND1-IT1Q9HBX3 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
SND1-IT1Q9HBX3 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
SND1-IT1Q9HBX3 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.36
SND1-IT1Q9HBX3 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
SND1-IT1Q9HBX3 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC12.77□□□□□ -0.36
SND1-IT1Q9HBX3 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC12.77□□□□□ -0.36
SND1-IT1Q9HBX3 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
SND1-IT1Q9HBX3 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.36
SND1-IT1Q9HBX3 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.36
SND1-IT1Q9HBX3 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
SND1-IT1Q9HBX3 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
SND1-IT1Q9HBX3 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC12.77□□□□□ -0.36
SND1-IT1Q9HBX3 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC12.77□□□□□ -0.36
SND1-IT1Q9HBX3 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.36
SND1-IT1Q9HBX3 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
SND1-IT1Q9HBX3 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
SND1-IT1Q9HBX3 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
SND1-IT1Q9HBX3 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC12.77□□□□□ -0.37
SND1-IT1Q9HBX3 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
SND1-IT1Q9HBX3 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC12.77□□□□□ -0.37
SND1-IT1Q9HBX3 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
SND1-IT1Q9HBX3 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
SND1-IT1Q9HBX3 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
SND1-IT1Q9HBX3 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
SND1-IT1Q9HBX3 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC12.77□□□□□ -0.37
SND1-IT1Q9HBX3 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
SND1-IT1Q9HBX3 AC100791.3-201ENST00000617619 330 ntBASIC12.77□□□□□ -0.37
SND1-IT1Q9HBX3 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
SND1-IT1Q9HBX3 AC105020.6-201ENST00000621523 1217 ntBASIC12.77□□□□□ -0.37
SND1-IT1Q9HBX3 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC12.77□□□□□ -0.37
SND1-IT1Q9HBX3 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
SND1-IT1Q9HBX3 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
SND1-IT1Q9HBX3 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
SND1-IT1Q9HBX3 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.37
SND1-IT1Q9HBX3 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
SND1-IT1Q9HBX3 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
SND1-IT1Q9HBX3 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
SND1-IT1Q9HBX3 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
SND1-IT1Q9HBX3 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC12.77□□□□□ -0.37
SND1-IT1Q9HBX3 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC12.77□□□□□ -0.37
SND1-IT1Q9HBX3 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC12.77□□□□□ -0.37
SND1-IT1Q9HBX3 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC12.77□□□□□ -0.37
SND1-IT1Q9HBX3 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC12.77□□□□□ -0.37
SND1-IT1Q9HBX3 AC093525.10-201ENST00000625130 1569 ntBASIC12.77□□□□□ -0.37
SND1-IT1Q9HBX3 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.37
SND1-IT1Q9HBX3 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC12.76□□□□□ -0.37
SND1-IT1Q9HBX3 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
SND1-IT1Q9HBX3 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC12.76□□□□□ -0.37
SND1-IT1Q9HBX3 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC12.76□□□□□ -0.37
SND1-IT1Q9HBX3 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
SND1-IT1Q9HBX3 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
SND1-IT1Q9HBX3 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
SND1-IT1Q9HBX3 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC12.76□□□□□ -0.37
SND1-IT1Q9HBX3 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
SND1-IT1Q9HBX3 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC12.76□□□□□ -0.37
SND1-IT1Q9HBX3 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
SND1-IT1Q9HBX3 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
SND1-IT1Q9HBX3 AC068880.1-201ENST00000507289 2297 ntBASIC12.76□□□□□ -0.37
SND1-IT1Q9HBX3 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC12.76□□□□□ -0.37
SND1-IT1Q9HBX3 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC12.76□□□□□ -0.37
SND1-IT1Q9HBX3 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC12.76□□□□□ -0.37
SND1-IT1Q9HBX3 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC12.76□□□□□ -0.37
SND1-IT1Q9HBX3 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC12.76□□□□□ -0.37
SND1-IT1Q9HBX3 AC007322.4-201ENST00000509611 723 ntBASIC12.76□□□□□ -0.37
SND1-IT1Q9HBX3 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
SND1-IT1Q9HBX3 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC12.76□□□□□ -0.37
SND1-IT1Q9HBX3 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
SND1-IT1Q9HBX3 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
SND1-IT1Q9HBX3 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
SND1-IT1Q9HBX3 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
SND1-IT1Q9HBX3 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
SND1-IT1Q9HBX3 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
SND1-IT1Q9HBX3 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC12.76□□□□□ -0.37
SND1-IT1Q9HBX3 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC12.76□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms