Protein–RNA interactions for Protein: Q9H611

PIF1, ATP-dependent DNA helicase PIF1, humanhuman

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PIF1Q9H611 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
PIF1Q9H611 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
PIF1Q9H611 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
PIF1Q9H611 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
PIF1Q9H611 MIR663A-201ENST00000385250 93 ntBASIC18.21■□□□□ 0.51
PIF1Q9H611 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
PIF1Q9H611 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
PIF1Q9H611 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC18.21■□□□□ 0.51
PIF1Q9H611 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
PIF1Q9H611 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
PIF1Q9H611 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC18.21■□□□□ 0.51
PIF1Q9H611 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC18.21■□□□□ 0.51
PIF1Q9H611 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
PIF1Q9H611 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
PIF1Q9H611 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
PIF1Q9H611 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
PIF1Q9H611 AC135050.7-201ENST00000624508 2218 ntBASIC18.21■□□□□ 0.5
PIF1Q9H611 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
PIF1Q9H611 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
PIF1Q9H611 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
PIF1Q9H611 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC18.2■□□□□ 0.5
PIF1Q9H611 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
PIF1Q9H611 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
PIF1Q9H611 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
PIF1Q9H611 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
PIF1Q9H611 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC18.2■□□□□ 0.5
PIF1Q9H611 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
PIF1Q9H611 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
PIF1Q9H611 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
PIF1Q9H611 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
PIF1Q9H611 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
PIF1Q9H611 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC18.2■□□□□ 0.5
PIF1Q9H611 NCF1B-203ENST00000435988 1254 ntBASIC18.2■□□□□ 0.5
PIF1Q9H611 HES2-206ENST00000489730 730 ntTSL 2 BASIC18.2■□□□□ 0.5
PIF1Q9H611 PPP1R14BP3-201ENST00000509033 445 ntBASIC18.2■□□□□ 0.5
PIF1Q9H611 PHB2-213ENST00000546111 858 ntTSL 2 BASIC18.2■□□□□ 0.5
PIF1Q9H611 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC18.2■□□□□ 0.5
PIF1Q9H611 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
PIF1Q9H611 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC18.2■□□□□ 0.5
PIF1Q9H611 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
PIF1Q9H611 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
PIF1Q9H611 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
PIF1Q9H611 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
PIF1Q9H611 AC104417.2-201ENST00000562989 1793 ntBASIC18.19■□□□□ 0.5
PIF1Q9H611 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
PIF1Q9H611 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
PIF1Q9H611 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
PIF1Q9H611 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
PIF1Q9H611 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
PIF1Q9H611 IRX1P1-201ENST00000438849 1838 ntBASIC18.19■□□□□ 0.5
PIF1Q9H611 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
PIF1Q9H611 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
PIF1Q9H611 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC18.19■□□□□ 0.5
PIF1Q9H611 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
PIF1Q9H611 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
PIF1Q9H611 AL050303.2-201ENST00000619798 666 ntBASIC18.19■□□□□ 0.5
PIF1Q9H611 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
PIF1Q9H611 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
PIF1Q9H611 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC18.19■□□□□ 0.5
PIF1Q9H611 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
PIF1Q9H611 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
PIF1Q9H611 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
PIF1Q9H611 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
PIF1Q9H611 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
PIF1Q9H611 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
PIF1Q9H611 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC18.19■□□□□ 0.5
PIF1Q9H611 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC18.19■□□□□ 0.5
PIF1Q9H611 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
PIF1Q9H611 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC18.19■□□□□ 0.5
PIF1Q9H611 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
PIF1Q9H611 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
PIF1Q9H611 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
PIF1Q9H611 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
PIF1Q9H611 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
PIF1Q9H611 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
PIF1Q9H611 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
PIF1Q9H611 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
PIF1Q9H611 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
PIF1Q9H611 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
PIF1Q9H611 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC18.18■□□□□ 0.5
PIF1Q9H611 AL390719.1-204ENST00000412397 1219 ntBASIC18.18■□□□□ 0.5
PIF1Q9H611 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC18.18■□□□□ 0.5
PIF1Q9H611 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
PIF1Q9H611 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC18.18■□□□□ 0.5
PIF1Q9H611 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
PIF1Q9H611 AL512353.2-201ENST00000448759 1962 ntBASIC18.18■□□□□ 0.5
PIF1Q9H611 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
PIF1Q9H611 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
PIF1Q9H611 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC18.18■□□□□ 0.5
PIF1Q9H611 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
PIF1Q9H611 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
PIF1Q9H611 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
PIF1Q9H611 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC18.17■□□□□ 0.5
PIF1Q9H611 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
PIF1Q9H611 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
PIF1Q9H611 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC18.17■□□□□ 0.5
PIF1Q9H611 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
PIF1Q9H611 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
PIF1Q9H611 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
PIF1Q9H611 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 83.6 ms