Protein–RNA interactions for Protein: Q96RF0

SNX18, Sorting nexin-18, humanhuman

Predictions only

Length 628 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX18Q96RF0 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
SNX18Q96RF0 NOC2LP2-201ENST00000407594 1944 ntBASIC17.33■□□□□ 0.37
SNX18Q96RF0 GOLGA6L3-201ENST00000507199 1679 ntBASIC17.33■□□□□ 0.37
SNX18Q96RF0 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
SNX18Q96RF0 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SNX18Q96RF0 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
SNX18Q96RF0 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SNX18Q96RF0 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
SNX18Q96RF0 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SNX18Q96RF0 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SNX18Q96RF0 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC17.33■□□□□ 0.36
SNX18Q96RF0 PNMA6B-201ENST00000538162 1200 ntBASIC17.33■□□□□ 0.36
SNX18Q96RF0 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC17.33■□□□□ 0.36
SNX18Q96RF0 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC17.33■□□□□ 0.36
SNX18Q96RF0 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC17.33■□□□□ 0.36
SNX18Q96RF0 AC008687.6-201ENST00000596318 630 ntBASIC17.33■□□□□ 0.36
SNX18Q96RF0 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC17.33■□□□□ 0.36
SNX18Q96RF0 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
SNX18Q96RF0 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SNX18Q96RF0 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
SNX18Q96RF0 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC17.33■□□□□ 0.36
SNX18Q96RF0 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
SNX18Q96RF0 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SNX18Q96RF0 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
SNX18Q96RF0 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
SNX18Q96RF0 AC141586.3-201ENST00000562166 1838 ntBASIC17.33■□□□□ 0.36
SNX18Q96RF0 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
SNX18Q96RF0 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
SNX18Q96RF0 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC17.33■□□□□ 0.36
SNX18Q96RF0 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
SNX18Q96RF0 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC17.33■□□□□ 0.36
SNX18Q96RF0 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
SNX18Q96RF0 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SNX18Q96RF0 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
SNX18Q96RF0 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SNX18Q96RF0 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SNX18Q96RF0 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SNX18Q96RF0 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SNX18Q96RF0 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SNX18Q96RF0 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC17.32■□□□□ 0.36
SNX18Q96RF0 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SNX18Q96RF0 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SNX18Q96RF0 AP006587.1-201ENST00000534129 1502 ntBASIC17.32■□□□□ 0.36
SNX18Q96RF0 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SNX18Q96RF0 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SNX18Q96RF0 KRT8P8-201ENST00000434750 1448 ntBASIC17.32■□□□□ 0.36
SNX18Q96RF0 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
SNX18Q96RF0 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
SNX18Q96RF0 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SNX18Q96RF0 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
SNX18Q96RF0 TREX2-204ENST00000370212 861 ntTSL 5 BASIC17.32■□□□□ 0.36
SNX18Q96RF0 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
SNX18Q96RF0 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
SNX18Q96RF0 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC17.32■□□□□ 0.36
SNX18Q96RF0 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC17.32■□□□□ 0.36
SNX18Q96RF0 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC17.32■□□□□ 0.36
SNX18Q96RF0 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC17.32■□□□□ 0.36
SNX18Q96RF0 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SNX18Q96RF0 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SNX18Q96RF0 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
SNX18Q96RF0 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
SNX18Q96RF0 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC17.32■□□□□ 0.36
SNX18Q96RF0 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
SNX18Q96RF0 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SNX18Q96RF0 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SNX18Q96RF0 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
SNX18Q96RF0 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
SNX18Q96RF0 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SNX18Q96RF0 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
SNX18Q96RF0 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SNX18Q96RF0 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
SNX18Q96RF0 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
SNX18Q96RF0 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC17.31■□□□□ 0.36
SNX18Q96RF0 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
SNX18Q96RF0 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
SNX18Q96RF0 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SNX18Q96RF0 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SNX18Q96RF0 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SNX18Q96RF0 ESRRAP1-201ENST00000400596 1257 ntBASIC17.31■□□□□ 0.36
SNX18Q96RF0 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC17.31■□□□□ 0.36
SNX18Q96RF0 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC17.31■□□□□ 0.36
SNX18Q96RF0 SLC29A4P2-201ENST00000504749 1089 ntBASIC17.31■□□□□ 0.36
SNX18Q96RF0 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC17.31■□□□□ 0.36
SNX18Q96RF0 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC17.31■□□□□ 0.36
SNX18Q96RF0 INO80E-214ENST00000620599 515 ntTSL 2 BASIC17.31■□□□□ 0.36
SNX18Q96RF0 AL121829.2-201ENST00000620908 328 ntBASIC17.31■□□□□ 0.36
SNX18Q96RF0 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SNX18Q96RF0 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SNX18Q96RF0 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SNX18Q96RF0 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC17.31■□□□□ 0.36
SNX18Q96RF0 ANKRD18DP-204ENST00000455355 1975 ntBASIC17.31■□□□□ 0.36
SNX18Q96RF0 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC17.31■□□□□ 0.36
SNX18Q96RF0 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC17.31■□□□□ 0.36
SNX18Q96RF0 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC17.31■□□□□ 0.36
SNX18Q96RF0 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SNX18Q96RF0 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SNX18Q96RF0 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
SNX18Q96RF0 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
SNX18Q96RF0 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SNX18Q96RF0 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 42.5 ms