Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
NPAS3Q8IXF0 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
NPAS3Q8IXF0 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
NPAS3Q8IXF0 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
NPAS3Q8IXF0 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC19.75■□□□□ 0.75
NPAS3Q8IXF0 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
NPAS3Q8IXF0 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
NPAS3Q8IXF0 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC19.75■□□□□ 0.75
NPAS3Q8IXF0 RASA4DP-201ENST00000460726 1199 ntBASIC19.75■□□□□ 0.75
NPAS3Q8IXF0 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC19.75■□□□□ 0.75
NPAS3Q8IXF0 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
NPAS3Q8IXF0 BCL10-202ENST00000620248 774 ntTSL 5 BASIC19.75■□□□□ 0.75
NPAS3Q8IXF0 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
NPAS3Q8IXF0 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
NPAS3Q8IXF0 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC19.75■□□□□ 0.75
NPAS3Q8IXF0 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
NPAS3Q8IXF0 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
NPAS3Q8IXF0 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC19.75■□□□□ 0.75
NPAS3Q8IXF0 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
NPAS3Q8IXF0 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
NPAS3Q8IXF0 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
NPAS3Q8IXF0 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
NPAS3Q8IXF0 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
NPAS3Q8IXF0 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
NPAS3Q8IXF0 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
NPAS3Q8IXF0 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
NPAS3Q8IXF0 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
NPAS3Q8IXF0 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
NPAS3Q8IXF0 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC19.74■□□□□ 0.75
NPAS3Q8IXF0 TSPY21P-201ENST00000433481 731 ntBASIC19.74■□□□□ 0.75
NPAS3Q8IXF0 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
NPAS3Q8IXF0 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC19.74■□□□□ 0.75
NPAS3Q8IXF0 NPAP1P7-201ENST00000613027 823 ntBASIC19.74■□□□□ 0.75
NPAS3Q8IXF0 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC19.74■□□□□ 0.75
NPAS3Q8IXF0 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC19.74■□□□□ 0.75
NPAS3Q8IXF0 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC19.74■□□□□ 0.75
NPAS3Q8IXF0 GPAT2P1-201ENST00000444924 1672 ntBASIC19.74■□□□□ 0.75
NPAS3Q8IXF0 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
NPAS3Q8IXF0 AC099778.1-201ENST00000568593 1911 ntBASIC19.74■□□□□ 0.75
NPAS3Q8IXF0 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
NPAS3Q8IXF0 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
NPAS3Q8IXF0 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC19.74■□□□□ 0.75
NPAS3Q8IXF0 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
NPAS3Q8IXF0 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
NPAS3Q8IXF0 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
NPAS3Q8IXF0 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
NPAS3Q8IXF0 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
NPAS3Q8IXF0 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
NPAS3Q8IXF0 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC19.73■□□□□ 0.75
NPAS3Q8IXF0 AL645929.1-201ENST00000420084 975 ntBASIC19.73■□□□□ 0.75
NPAS3Q8IXF0 AC092597.1-201ENST00000487352 616 ntBASIC19.73■□□□□ 0.75
NPAS3Q8IXF0 AC034232.1-201ENST00000506026 1064 ntBASIC19.73■□□□□ 0.75
NPAS3Q8IXF0 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC19.73■□□□□ 0.75
NPAS3Q8IXF0 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC19.73■□□□□ 0.75
NPAS3Q8IXF0 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC19.73■□□□□ 0.75
NPAS3Q8IXF0 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
NPAS3Q8IXF0 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
NPAS3Q8IXF0 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
NPAS3Q8IXF0 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
NPAS3Q8IXF0 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
NPAS3Q8IXF0 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC19.73■□□□□ 0.75
NPAS3Q8IXF0 LINC01006-201ENST00000333319 2292 ntBASIC19.73■□□□□ 0.75
NPAS3Q8IXF0 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
NPAS3Q8IXF0 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
NPAS3Q8IXF0 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC19.73■□□□□ 0.75
NPAS3Q8IXF0 SDHAP1-207ENST00000440850 2000 ntBASIC19.73■□□□□ 0.75
NPAS3Q8IXF0 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
NPAS3Q8IXF0 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
NPAS3Q8IXF0 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
NPAS3Q8IXF0 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC19.73■□□□□ 0.75
NPAS3Q8IXF0 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
NPAS3Q8IXF0 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
NPAS3Q8IXF0 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
NPAS3Q8IXF0 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
NPAS3Q8IXF0 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
NPAS3Q8IXF0 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
NPAS3Q8IXF0 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
NPAS3Q8IXF0 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
NPAS3Q8IXF0 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC19.72■□□□□ 0.75
NPAS3Q8IXF0 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
NPAS3Q8IXF0 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
NPAS3Q8IXF0 VPS72-207ENST00000640458 689 ntTSL 5 BASIC19.72■□□□□ 0.75
NPAS3Q8IXF0 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
NPAS3Q8IXF0 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
NPAS3Q8IXF0 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
NPAS3Q8IXF0 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC19.71■□□□□ 0.75
NPAS3Q8IXF0 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
NPAS3Q8IXF0 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC19.71■□□□□ 0.75
NPAS3Q8IXF0 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
NPAS3Q8IXF0 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC19.71■□□□□ 0.75
NPAS3Q8IXF0 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
NPAS3Q8IXF0 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
NPAS3Q8IXF0 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
NPAS3Q8IXF0 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
NPAS3Q8IXF0 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC19.71■□□□□ 0.75
NPAS3Q8IXF0 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
NPAS3Q8IXF0 AC092667.1-201ENST00000434301 2586 ntBASIC19.71■□□□□ 0.75
NPAS3Q8IXF0 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC19.71■□□□□ 0.75
NPAS3Q8IXF0 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
NPAS3Q8IXF0 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms