Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
USP41Q3LFD5 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC20.28■□□□□ 0.84
USP41Q3LFD5 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC20.28■□□□□ 0.84
USP41Q3LFD5 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
USP41Q3LFD5 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
USP41Q3LFD5 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
USP41Q3LFD5 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
USP41Q3LFD5 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
USP41Q3LFD5 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC20.28■□□□□ 0.84
USP41Q3LFD5 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
USP41Q3LFD5 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC20.28■□□□□ 0.84
USP41Q3LFD5 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC20.28■□□□□ 0.84
USP41Q3LFD5 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
USP41Q3LFD5 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC20.28■□□□□ 0.84
USP41Q3LFD5 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
USP41Q3LFD5 COPS8-203ENST00000409334 794 ntTSL 5 BASIC20.28■□□□□ 0.84
USP41Q3LFD5 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC20.28■□□□□ 0.84
USP41Q3LFD5 KRT18P38-201ENST00000449496 1282 ntBASIC20.28■□□□□ 0.84
USP41Q3LFD5 SNX5-210ENST00000481323 562 ntTSL 3 BASIC20.28■□□□□ 0.84
USP41Q3LFD5 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
USP41Q3LFD5 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
USP41Q3LFD5 MIR4674-201ENST00000582457 87 ntBASIC20.28■□□□□ 0.84
USP41Q3LFD5 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC20.28■□□□□ 0.84
USP41Q3LFD5 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC20.28■□□□□ 0.84
USP41Q3LFD5 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC20.28■□□□□ 0.84
USP41Q3LFD5 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
USP41Q3LFD5 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
USP41Q3LFD5 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
USP41Q3LFD5 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC20.27■□□□□ 0.84
USP41Q3LFD5 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC20.27■□□□□ 0.84
USP41Q3LFD5 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC20.27■□□□□ 0.84
USP41Q3LFD5 ADM-207ENST00000530439 1839 ntTSL 2 BASIC20.27■□□□□ 0.84
USP41Q3LFD5 SDHAP1-207ENST00000440850 2000 ntBASIC20.27■□□□□ 0.84
USP41Q3LFD5 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
USP41Q3LFD5 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
USP41Q3LFD5 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC20.27■□□□□ 0.84
USP41Q3LFD5 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
USP41Q3LFD5 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
USP41Q3LFD5 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC20.27■□□□□ 0.84
USP41Q3LFD5 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
USP41Q3LFD5 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC20.27■□□□□ 0.84
USP41Q3LFD5 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
USP41Q3LFD5 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
USP41Q3LFD5 IER3-202ENST00000376377 1350 ntBASIC20.27■□□□□ 0.84
USP41Q3LFD5 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
USP41Q3LFD5 DAP-202ENST00000432074 1048 ntTSL 2 BASIC20.27■□□□□ 0.84
USP41Q3LFD5 NMU-205ENST00000511469 756 ntTSL 3 BASIC20.27■□□□□ 0.84
USP41Q3LFD5 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
USP41Q3LFD5 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC20.27■□□□□ 0.84
USP41Q3LFD5 USF2-205ENST00000594064 1179 ntTSL 2 BASIC20.27■□□□□ 0.84
USP41Q3LFD5 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC20.27■□□□□ 0.84
USP41Q3LFD5 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
USP41Q3LFD5 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
USP41Q3LFD5 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
USP41Q3LFD5 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.83
USP41Q3LFD5 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.83
USP41Q3LFD5 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC20.27■□□□□ 0.83
USP41Q3LFD5 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
USP41Q3LFD5 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
USP41Q3LFD5 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC20.27■□□□□ 0.83
USP41Q3LFD5 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC20.27■□□□□ 0.83
USP41Q3LFD5 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
USP41Q3LFD5 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
USP41Q3LFD5 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC20.26■□□□□ 0.83
USP41Q3LFD5 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
USP41Q3LFD5 GCSHP2-201ENST00000560971 527 ntBASIC20.26■□□□□ 0.83
USP41Q3LFD5 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC20.26■□□□□ 0.83
USP41Q3LFD5 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
USP41Q3LFD5 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
USP41Q3LFD5 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
USP41Q3LFD5 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
USP41Q3LFD5 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
USP41Q3LFD5 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
USP41Q3LFD5 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
USP41Q3LFD5 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
USP41Q3LFD5 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
USP41Q3LFD5 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
USP41Q3LFD5 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
USP41Q3LFD5 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC20.25■□□□□ 0.83
USP41Q3LFD5 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
USP41Q3LFD5 STARP1-201ENST00000397973 869 ntBASIC20.25■□□□□ 0.83
USP41Q3LFD5 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC20.25■□□□□ 0.83
USP41Q3LFD5 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
USP41Q3LFD5 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC20.25■□□□□ 0.83
USP41Q3LFD5 CR769767.2-201ENST00000622735 460 ntBASIC20.25■□□□□ 0.83
USP41Q3LFD5 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC20.25■□□□□ 0.83
USP41Q3LFD5 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC20.25■□□□□ 0.83
USP41Q3LFD5 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
USP41Q3LFD5 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
USP41Q3LFD5 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
USP41Q3LFD5 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
USP41Q3LFD5 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
USP41Q3LFD5 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC20.24■□□□□ 0.83
USP41Q3LFD5 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC20.24■□□□□ 0.83
USP41Q3LFD5 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
USP41Q3LFD5 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
USP41Q3LFD5 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC20.24■□□□□ 0.83
USP41Q3LFD5 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
USP41Q3LFD5 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
USP41Q3LFD5 GAD2-202ENST00000376248 680 ntTSL 5 BASIC20.24■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 20.8 ms