Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
CDX1P47902 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
CDX1P47902 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC15.53■□□□□ 0.08
CDX1P47902 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC15.53■□□□□ 0.08
CDX1P47902 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
CDX1P47902 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC15.53■□□□□ 0.08
CDX1P47902 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
CDX1P47902 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
CDX1P47902 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC15.53■□□□□ 0.08
CDX1P47902 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CDX1P47902 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
CDX1P47902 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC15.53■□□□□ 0.08
CDX1P47902 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
CDX1P47902 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC15.53■□□□□ 0.08
CDX1P47902 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC15.53■□□□□ 0.08
CDX1P47902 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC15.53■□□□□ 0.08
CDX1P47902 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC15.53■□□□□ 0.08
CDX1P47902 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
CDX1P47902 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC15.53■□□□□ 0.08
CDX1P47902 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC15.53■□□□□ 0.08
CDX1P47902 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC15.53■□□□□ 0.08
CDX1P47902 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC15.53■□□□□ 0.08
CDX1P47902 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC15.53■□□□□ 0.08
CDX1P47902 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
CDX1P47902 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC15.53■□□□□ 0.08
CDX1P47902 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC15.53■□□□□ 0.08
CDX1P47902 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
CDX1P47902 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CDX1P47902 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC15.53■□□□□ 0.08
CDX1P47902 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CDX1P47902 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CDX1P47902 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC15.53■□□□□ 0.08
CDX1P47902 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CDX1P47902 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CDX1P47902 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
CDX1P47902 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC15.53■□□□□ 0.08
CDX1P47902 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC15.53■□□□□ 0.08
CDX1P47902 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC15.52■□□□□ 0.08
CDX1P47902 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
CDX1P47902 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
CDX1P47902 KRT8P20-201ENST00000423953 1409 ntBASIC15.52■□□□□ 0.08
CDX1P47902 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
CDX1P47902 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
CDX1P47902 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
CDX1P47902 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC15.52■□□□□ 0.08
CDX1P47902 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.08
CDX1P47902 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
CDX1P47902 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.08
CDX1P47902 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC15.52■□□□□ 0.08
CDX1P47902 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.08
CDX1P47902 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
CDX1P47902 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.08
CDX1P47902 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC15.52■□□□□ 0.08
CDX1P47902 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
CDX1P47902 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
CDX1P47902 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
CDX1P47902 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.08
CDX1P47902 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
CDX1P47902 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
CDX1P47902 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
CDX1P47902 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC15.52■□□□□ 0.08
CDX1P47902 THEM4-205ENST00000489410 643 ntTSL 2 BASIC15.52■□□□□ 0.08
CDX1P47902 HES2-206ENST00000489730 730 ntTSL 2 BASIC15.52■□□□□ 0.08
CDX1P47902 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC15.52■□□□□ 0.08
CDX1P47902 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC15.52■□□□□ 0.08
CDX1P47902 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.08
CDX1P47902 MTDHP1-201ENST00000605323 784 ntBASIC15.52■□□□□ 0.08
CDX1P47902 AL031963.3-201ENST00000606441 850 ntBASIC15.52■□□□□ 0.08
CDX1P47902 FAM197Y4-202ENST00000622692 608 ntBASIC15.52■□□□□ 0.08
CDX1P47902 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC15.52■□□□□ 0.08
CDX1P47902 PTBP1P-201ENST00000554374 1601 ntBASIC15.52■□□□□ 0.08
CDX1P47902 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC15.52■□□□□ 0.07
CDX1P47902 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
CDX1P47902 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC15.52■□□□□ 0.07
CDX1P47902 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
CDX1P47902 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.07
CDX1P47902 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.07
CDX1P47902 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
CDX1P47902 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC15.52■□□□□ 0.07
CDX1P47902 AC093484.2-201ENST00000580996 2166 ntBASIC15.52■□□□□ 0.07
CDX1P47902 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.07
CDX1P47902 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.07
CDX1P47902 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC15.51■□□□□ 0.07
CDX1P47902 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
CDX1P47902 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC15.51■□□□□ 0.07
CDX1P47902 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
CDX1P47902 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
CDX1P47902 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC15.51■□□□□ 0.07
CDX1P47902 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CDX1P47902 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
CDX1P47902 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC15.51■□□□□ 0.07
CDX1P47902 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CDX1P47902 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
CDX1P47902 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC15.51■□□□□ 0.07
CDX1P47902 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC15.51■□□□□ 0.07
CDX1P47902 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CDX1P47902 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CDX1P47902 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
CDX1P47902 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CDX1P47902 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 44.4 ms