Protein–RNA interactions for Protein: O75131

CPNE3, Copine-3, humanhuman

Known RBP Predictions only

Length 537 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3O75131 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CPNE3O75131 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC18.28■□□□□ 0.52
CPNE3O75131 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC18.28■□□□□ 0.52
CPNE3O75131 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CPNE3O75131 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CPNE3O75131 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC18.28■□□□□ 0.52
CPNE3O75131 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
CPNE3O75131 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CPNE3O75131 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CPNE3O75131 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CPNE3O75131 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
CPNE3O75131 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
CPNE3O75131 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CPNE3O75131 HMGA1P5-201ENST00000412453 271 ntBASIC18.28■□□□□ 0.52
CPNE3O75131 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC18.28■□□□□ 0.52
CPNE3O75131 RMI2-205ENST00000576027 818 ntTSL 2 BASIC18.28■□□□□ 0.52
CPNE3O75131 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CPNE3O75131 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC18.28■□□□□ 0.52
CPNE3O75131 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CPNE3O75131 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC18.28■□□□□ 0.52
CPNE3O75131 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC18.28■□□□□ 0.52
CPNE3O75131 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC18.28■□□□□ 0.52
CPNE3O75131 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
CPNE3O75131 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
CPNE3O75131 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CPNE3O75131 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CPNE3O75131 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC18.28■□□□□ 0.52
CPNE3O75131 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CPNE3O75131 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CPNE3O75131 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CPNE3O75131 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC18.28■□□□□ 0.52
CPNE3O75131 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CPNE3O75131 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC18.27■□□□□ 0.52
CPNE3O75131 LINC01465-201ENST00000408887 1940 ntBASIC18.27■□□□□ 0.52
CPNE3O75131 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
CPNE3O75131 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CPNE3O75131 ME2-218ENST00000640965 2476 ntTSL 5 BASIC18.27■□□□□ 0.52
CPNE3O75131 LETM1P2-201ENST00000597330 2178 ntBASIC18.27■□□□□ 0.52
CPNE3O75131 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CPNE3O75131 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC18.27■□□□□ 0.52
CPNE3O75131 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CPNE3O75131 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC18.27■□□□□ 0.52
CPNE3O75131 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CPNE3O75131 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
CPNE3O75131 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
CPNE3O75131 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CPNE3O75131 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
CPNE3O75131 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC18.27■□□□□ 0.52
CPNE3O75131 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC18.27■□□□□ 0.52
CPNE3O75131 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC18.27■□□□□ 0.52
CPNE3O75131 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC18.27■□□□□ 0.52
CPNE3O75131 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC18.27■□□□□ 0.52
CPNE3O75131 NME3-204ENST00000563498 920 ntTSL 2 BASIC18.27■□□□□ 0.52
CPNE3O75131 RBM42-202ENST00000586618 771 ntTSL 3 BASIC18.27■□□□□ 0.52
CPNE3O75131 GPX4-207ENST00000589115 812 ntTSL 2 BASIC18.27■□□□□ 0.52
CPNE3O75131 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC18.27■□□□□ 0.52
CPNE3O75131 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
CPNE3O75131 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.51
CPNE3O75131 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.51
CPNE3O75131 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.51
CPNE3O75131 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
CPNE3O75131 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC18.26■□□□□ 0.51
CPNE3O75131 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CPNE3O75131 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CPNE3O75131 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC18.26■□□□□ 0.51
CPNE3O75131 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CPNE3O75131 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC18.26■□□□□ 0.51
CPNE3O75131 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CPNE3O75131 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CPNE3O75131 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CPNE3O75131 ARMC10P1-201ENST00000313754 855 ntBASIC18.26■□□□□ 0.51
CPNE3O75131 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC18.26■□□□□ 0.51
CPNE3O75131 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC18.26■□□□□ 0.51
CPNE3O75131 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC18.26■□□□□ 0.51
CPNE3O75131 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC18.26■□□□□ 0.51
CPNE3O75131 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC18.26■□□□□ 0.51
CPNE3O75131 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CPNE3O75131 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC18.26■□□□□ 0.51
CPNE3O75131 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CPNE3O75131 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CPNE3O75131 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC18.26■□□□□ 0.51
CPNE3O75131 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
CPNE3O75131 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC18.26■□□□□ 0.51
CPNE3O75131 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CPNE3O75131 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC18.26■□□□□ 0.51
CPNE3O75131 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC18.26■□□□□ 0.51
CPNE3O75131 AC112907.3-201ENST00000577781 2400 ntBASIC18.25■□□□□ 0.51
CPNE3O75131 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CPNE3O75131 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
CPNE3O75131 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CPNE3O75131 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CPNE3O75131 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CPNE3O75131 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CPNE3O75131 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
CPNE3O75131 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC18.25■□□□□ 0.51
CPNE3O75131 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC18.25■□□□□ 0.51
CPNE3O75131 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CPNE3O75131 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CPNE3O75131 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CPNE3O75131 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 15.2 ms