Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC18.64■□□□□ 0.58
SDC3O75056 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC18.64■□□□□ 0.58
SDC3O75056 SDHAP1-207ENST00000440850 2000 ntBASIC18.64■□□□□ 0.58
SDC3O75056 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC18.64■□□□□ 0.58
SDC3O75056 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC18.64■□□□□ 0.58
SDC3O75056 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC18.64■□□□□ 0.57
SDC3O75056 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC18.64■□□□□ 0.57
SDC3O75056 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC18.64■□□□□ 0.57
SDC3O75056 BET1L-202ENST00000332865 533 ntTSL 5 BASIC18.64■□□□□ 0.57
SDC3O75056 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC18.64■□□□□ 0.57
SDC3O75056 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
SDC3O75056 SPDYE15P-201ENST00000424157 909 ntBASIC18.64■□□□□ 0.57
SDC3O75056 DAP-202ENST00000432074 1048 ntTSL 2 BASIC18.64■□□□□ 0.57
SDC3O75056 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC18.64■□□□□ 0.57
SDC3O75056 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC18.64■□□□□ 0.57
SDC3O75056 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC18.64■□□□□ 0.57
SDC3O75056 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC18.64■□□□□ 0.57
SDC3O75056 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC18.64■□□□□ 0.57
SDC3O75056 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC18.64■□□□□ 0.57
SDC3O75056 AC083849.1-201ENST00000615227 514 ntBASIC18.64■□□□□ 0.57
SDC3O75056 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
SDC3O75056 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
SDC3O75056 TCF3P1-201ENST00000423021 1937 ntBASIC18.64■□□□□ 0.57
SDC3O75056 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC18.64■□□□□ 0.57
SDC3O75056 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
SDC3O75056 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SDC3O75056 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
SDC3O75056 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
SDC3O75056 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
SDC3O75056 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC18.64■□□□□ 0.57
SDC3O75056 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
SDC3O75056 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SDC3O75056 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC18.63■□□□□ 0.57
SDC3O75056 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC18.63■□□□□ 0.57
SDC3O75056 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SDC3O75056 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
SDC3O75056 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SDC3O75056 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SDC3O75056 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
SDC3O75056 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SDC3O75056 KRT18P48-201ENST00000434763 852 ntBASIC18.63■□□□□ 0.57
SDC3O75056 HCG4P8-203ENST00000443049 980 ntBASIC18.63■□□□□ 0.57
SDC3O75056 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
SDC3O75056 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC18.63■□□□□ 0.57
SDC3O75056 PTK2-216ENST00000519881 863 ntTSL 3 BASIC18.63■□□□□ 0.57
SDC3O75056 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC18.63■□□□□ 0.57
SDC3O75056 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC18.63■□□□□ 0.57
SDC3O75056 NEK4P2-201ENST00000580004 1012 ntBASIC18.63■□□□□ 0.57
SDC3O75056 AC116407.4-201ENST00000623319 1061 ntBASIC18.63■□□□□ 0.57
SDC3O75056 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SDC3O75056 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SDC3O75056 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SDC3O75056 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SDC3O75056 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC18.63■□□□□ 0.57
SDC3O75056 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
SDC3O75056 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC18.63■□□□□ 0.57
SDC3O75056 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
SDC3O75056 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SDC3O75056 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC18.62■□□□□ 0.57
SDC3O75056 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
SDC3O75056 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SDC3O75056 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SDC3O75056 STX6-204ENST00000542060 4809 ntTSL 2 BASIC18.62■□□□□ 0.57
SDC3O75056 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
SDC3O75056 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC18.62■□□□□ 0.57
SDC3O75056 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SDC3O75056 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC18.62■□□□□ 0.57
SDC3O75056 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SDC3O75056 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SDC3O75056 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SDC3O75056 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC18.62■□□□□ 0.57
SDC3O75056 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC18.62■□□□□ 0.57
SDC3O75056 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
SDC3O75056 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SDC3O75056 FXN-203ENST00000396366 922 ntTSL 2 BASIC18.62■□□□□ 0.57
SDC3O75056 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
SDC3O75056 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC18.62■□□□□ 0.57
SDC3O75056 TSPY23P-201ENST00000440136 739 ntBASIC18.62■□□□□ 0.57
SDC3O75056 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC18.62■□□□□ 0.57
SDC3O75056 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
SDC3O75056 CD81-212ENST00000526072 1172 ntTSL 5 BASIC18.62■□□□□ 0.57
SDC3O75056 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC18.62■□□□□ 0.57
SDC3O75056 ZNF444P1-201ENST00000559497 298 ntBASIC18.62■□□□□ 0.57
SDC3O75056 CR769767.2-201ENST00000622735 460 ntBASIC18.62■□□□□ 0.57
SDC3O75056 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SDC3O75056 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC18.62■□□□□ 0.57
SDC3O75056 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SDC3O75056 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC18.62■□□□□ 0.57
SDC3O75056 LINC01311-201ENST00000565162 1445 ntBASIC18.62■□□□□ 0.57
SDC3O75056 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC18.62■□□□□ 0.57
SDC3O75056 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SDC3O75056 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
SDC3O75056 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SDC3O75056 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SDC3O75056 LBX2-AS1-202ENST00000603175 2083 ntBASIC18.62■□□□□ 0.57
SDC3O75056 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SDC3O75056 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
SDC3O75056 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
SDC3O75056 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
SDC3O75056 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 20.9 ms