Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
HDAC3O15379 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
HDAC3O15379 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
HDAC3O15379 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC18.58■□□□□ 0.56
HDAC3O15379 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
HDAC3O15379 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
HDAC3O15379 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC18.57■□□□□ 0.56
HDAC3O15379 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
HDAC3O15379 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
HDAC3O15379 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC18.57■□□□□ 0.56
HDAC3O15379 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
HDAC3O15379 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
HDAC3O15379 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
HDAC3O15379 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
HDAC3O15379 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
HDAC3O15379 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
HDAC3O15379 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
HDAC3O15379 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
HDAC3O15379 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
HDAC3O15379 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
HDAC3O15379 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
HDAC3O15379 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
HDAC3O15379 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
HDAC3O15379 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC18.57■□□□□ 0.56
HDAC3O15379 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
HDAC3O15379 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
HDAC3O15379 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
HDAC3O15379 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
HDAC3O15379 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC18.57■□□□□ 0.56
HDAC3O15379 AC004911.1-201ENST00000416316 871 ntBASIC18.57■□□□□ 0.56
HDAC3O15379 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC18.57■□□□□ 0.56
HDAC3O15379 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC18.57■□□□□ 0.56
HDAC3O15379 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC18.57■□□□□ 0.56
HDAC3O15379 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC18.57■□□□□ 0.56
HDAC3O15379 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
HDAC3O15379 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
HDAC3O15379 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
HDAC3O15379 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
HDAC3O15379 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
HDAC3O15379 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
HDAC3O15379 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
HDAC3O15379 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
HDAC3O15379 COBL-210ENST00000632460 1941 ntTSL 5 BASIC18.57■□□□□ 0.56
HDAC3O15379 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
HDAC3O15379 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
HDAC3O15379 PCDHB18P-201ENST00000524813 2368 ntBASIC18.56■□□□□ 0.56
HDAC3O15379 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC18.56■□□□□ 0.56
HDAC3O15379 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC18.56■□□□□ 0.56
HDAC3O15379 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
HDAC3O15379 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
HDAC3O15379 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC18.56■□□□□ 0.56
HDAC3O15379 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC18.56■□□□□ 0.56
HDAC3O15379 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC18.56■□□□□ 0.56
HDAC3O15379 KRT18P16-201ENST00000510337 1294 ntBASIC18.56■□□□□ 0.56
HDAC3O15379 AF201337.1-201ENST00000520239 748 ntBASIC18.56■□□□□ 0.56
HDAC3O15379 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC18.56■□□□□ 0.56
HDAC3O15379 AC105036.2-201ENST00000569468 176 ntBASIC18.56■□□□□ 0.56
HDAC3O15379 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC18.56■□□□□ 0.56
HDAC3O15379 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
HDAC3O15379 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC18.56■□□□□ 0.56
HDAC3O15379 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
HDAC3O15379 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
HDAC3O15379 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC18.56■□□□□ 0.56
HDAC3O15379 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC18.56■□□□□ 0.56
HDAC3O15379 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
HDAC3O15379 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
HDAC3O15379 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
HDAC3O15379 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
HDAC3O15379 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
HDAC3O15379 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
HDAC3O15379 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
HDAC3O15379 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
HDAC3O15379 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
HDAC3O15379 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC18.55■□□□□ 0.56
HDAC3O15379 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC18.55■□□□□ 0.56
HDAC3O15379 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC18.55■□□□□ 0.56
HDAC3O15379 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC18.55■□□□□ 0.56
HDAC3O15379 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC18.55■□□□□ 0.56
HDAC3O15379 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC18.55■□□□□ 0.56
HDAC3O15379 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC18.55■□□□□ 0.56
HDAC3O15379 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC18.55■□□□□ 0.56
HDAC3O15379 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC18.55■□□□□ 0.56
HDAC3O15379 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
HDAC3O15379 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
HDAC3O15379 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
HDAC3O15379 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
HDAC3O15379 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
HDAC3O15379 OR2A1-AS1-201ENST00000462305 773 ntBASIC18.55■□□□□ 0.56
HDAC3O15379 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC18.55■□□□□ 0.56
HDAC3O15379 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC18.55■□□□□ 0.56
HDAC3O15379 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC18.55■□□□□ 0.56
HDAC3O15379 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
HDAC3O15379 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC18.55■□□□□ 0.56
HDAC3O15379 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
HDAC3O15379 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
HDAC3O15379 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
HDAC3O15379 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
HDAC3O15379 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
HDAC3O15379 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC18.55■□□□□ 0.56
HDAC3O15379 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC18.55■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 18.3 ms