Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC16.23■□□□□ 0.19
SDCBPO00560 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC16.23■□□□□ 0.19
SDCBPO00560 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC16.23■□□□□ 0.19
SDCBPO00560 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SDCBPO00560 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SDCBPO00560 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SDCBPO00560 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SDCBPO00560 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
SDCBPO00560 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
SDCBPO00560 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
SDCBPO00560 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
SDCBPO00560 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC16.23■□□□□ 0.19
SDCBPO00560 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SDCBPO00560 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC16.23■□□□□ 0.19
SDCBPO00560 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
SDCBPO00560 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SDCBPO00560 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
SDCBPO00560 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
SDCBPO00560 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SDCBPO00560 BCL2-203ENST00000589955 5011 ntBASIC16.22■□□□□ 0.19
SDCBPO00560 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SDCBPO00560 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SDCBPO00560 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
SDCBPO00560 AC116351.2-201ENST00000606540 1585 ntBASIC16.22■□□□□ 0.19
SDCBPO00560 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC16.22■□□□□ 0.19
SDCBPO00560 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
SDCBPO00560 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SDCBPO00560 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC16.22■□□□□ 0.19
SDCBPO00560 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SDCBPO00560 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SDCBPO00560 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SDCBPO00560 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SDCBPO00560 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC16.22■□□□□ 0.19
SDCBPO00560 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
SDCBPO00560 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
SDCBPO00560 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC16.22■□□□□ 0.19
SDCBPO00560 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC16.22■□□□□ 0.19
SDCBPO00560 REXO2-208ENST00000539754 791 ntTSL 2 BASIC16.22■□□□□ 0.19
SDCBPO00560 AC098934.4-201ENST00000564127 592 ntBASIC16.22■□□□□ 0.19
SDCBPO00560 HLA-B-256ENST00000639848 1089 ntBASIC16.22■□□□□ 0.19
SDCBPO00560 MYC-209ENST00000641252 345 ntBASIC16.22■□□□□ 0.19
SDCBPO00560 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SDCBPO00560 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SDCBPO00560 AC090164.3-201ENST00000610780 2143 ntBASIC16.22■□□□□ 0.19
SDCBPO00560 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC16.22■□□□□ 0.19
SDCBPO00560 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
SDCBPO00560 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC16.22■□□□□ 0.19
SDCBPO00560 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
SDCBPO00560 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SDCBPO00560 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
SDCBPO00560 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC16.22■□□□□ 0.19
SDCBPO00560 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
SDCBPO00560 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC16.21■□□□□ 0.19
SDCBPO00560 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SDCBPO00560 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC16.21■□□□□ 0.19
SDCBPO00560 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SDCBPO00560 USP39-202ENST00000409025 1946 ntTSL 5 BASIC16.21■□□□□ 0.19
SDCBPO00560 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC16.21■□□□□ 0.19
SDCBPO00560 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
SDCBPO00560 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.19
SDCBPO00560 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SDCBPO00560 AC135050.7-201ENST00000624508 2218 ntBASIC16.21■□□□□ 0.19
SDCBPO00560 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
SDCBPO00560 FP475955.4-201ENST00000623131 1990 ntBASIC16.21■□□□□ 0.19
SDCBPO00560 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC16.21■□□□□ 0.19
SDCBPO00560 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC16.21■□□□□ 0.19
SDCBPO00560 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
SDCBPO00560 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC16.21■□□□□ 0.19
SDCBPO00560 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC16.21■□□□□ 0.19
SDCBPO00560 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
SDCBPO00560 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC16.21■□□□□ 0.19
SDCBPO00560 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC16.21■□□□□ 0.19
SDCBPO00560 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC16.21■□□□□ 0.19
SDCBPO00560 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
SDCBPO00560 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC16.21■□□□□ 0.19
SDCBPO00560 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
SDCBPO00560 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC16.21■□□□□ 0.19
SDCBPO00560 AC104771.1-201ENST00000603335 964 ntBASIC16.21■□□□□ 0.19
SDCBPO00560 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC16.21■□□□□ 0.19
SDCBPO00560 GAMT-205ENST00000640762 751 ntTSL 5 BASIC16.21■□□□□ 0.19
SDCBPO00560 AC133041.1-202ENST00000642053 222 ntBASIC16.21■□□□□ 0.19
SDCBPO00560 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.19
SDCBPO00560 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC16.21■□□□□ 0.19
SDCBPO00560 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
SDCBPO00560 ZNF815P-204ENST00000434898 1737 ntBASIC16.21■□□□□ 0.19
SDCBPO00560 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC16.21■□□□□ 0.19
SDCBPO00560 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SDCBPO00560 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC16.21■□□□□ 0.19
SDCBPO00560 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC16.21■□□□□ 0.19
SDCBPO00560 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC16.21■□□□□ 0.19
SDCBPO00560 AL133373.2-201ENST00000623187 2828 ntBASIC16.21■□□□□ 0.19
SDCBPO00560 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
SDCBPO00560 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC16.21■□□□□ 0.18
SDCBPO00560 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.18
SDCBPO00560 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC16.21■□□□□ 0.18
SDCBPO00560 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
SDCBPO00560 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC16.2■□□□□ 0.18
SDCBPO00560 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
SDCBPO00560 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
SDCBPO00560 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms