Protein–RNA interactions for Protein: Q9NXB0

MKS1, Meckel syndrome type 1 protein, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1Q9NXB0 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
MKS1Q9NXB0 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
MKS1Q9NXB0 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC18.88■□□□□ 0.61
MKS1Q9NXB0 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
MKS1Q9NXB0 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC18.88■□□□□ 0.61
MKS1Q9NXB0 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
MKS1Q9NXB0 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
MKS1Q9NXB0 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
MKS1Q9NXB0 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC18.88■□□□□ 0.61
MKS1Q9NXB0 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
MKS1Q9NXB0 PCDHB18P-201ENST00000524813 2368 ntBASIC18.88■□□□□ 0.61
MKS1Q9NXB0 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
MKS1Q9NXB0 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
MKS1Q9NXB0 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC18.88■□□□□ 0.61
MKS1Q9NXB0 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC18.88■□□□□ 0.61
MKS1Q9NXB0 RHOD-202ENST00000532559 538 ntTSL 3 BASIC18.88■□□□□ 0.61
MKS1Q9NXB0 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC18.88■□□□□ 0.61
MKS1Q9NXB0 AC092118.2-201ENST00000613495 667 ntBASIC18.88■□□□□ 0.61
MKS1Q9NXB0 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC18.88■□□□□ 0.61
MKS1Q9NXB0 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
MKS1Q9NXB0 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC18.88■□□□□ 0.61
MKS1Q9NXB0 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
MKS1Q9NXB0 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC18.88■□□□□ 0.61
MKS1Q9NXB0 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC18.88■□□□□ 0.61
MKS1Q9NXB0 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
MKS1Q9NXB0 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC18.88■□□□□ 0.61
MKS1Q9NXB0 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
MKS1Q9NXB0 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC18.88■□□□□ 0.61
MKS1Q9NXB0 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
MKS1Q9NXB0 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
MKS1Q9NXB0 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
MKS1Q9NXB0 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
MKS1Q9NXB0 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC18.87■□□□□ 0.61
MKS1Q9NXB0 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
MKS1Q9NXB0 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
MKS1Q9NXB0 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
MKS1Q9NXB0 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
MKS1Q9NXB0 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
MKS1Q9NXB0 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
MKS1Q9NXB0 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
MKS1Q9NXB0 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC18.87■□□□□ 0.61
MKS1Q9NXB0 ABHD17AP6-201ENST00000458502 1044 ntBASIC18.87■□□□□ 0.61
MKS1Q9NXB0 GOLGA6L5P-202ENST00000515341 1828 ntBASIC18.87■□□□□ 0.61
MKS1Q9NXB0 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC18.87■□□□□ 0.61
MKS1Q9NXB0 PNN-205ENST00000556530 601 ntTSL 2 BASIC18.87■□□□□ 0.61
MKS1Q9NXB0 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC18.87■□□□□ 0.61
MKS1Q9NXB0 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC18.87■□□□□ 0.61
MKS1Q9NXB0 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC18.87■□□□□ 0.61
MKS1Q9NXB0 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
MKS1Q9NXB0 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
MKS1Q9NXB0 AL121829.2-201ENST00000620908 328 ntBASIC18.87■□□□□ 0.61
MKS1Q9NXB0 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC18.87■□□□□ 0.61
MKS1Q9NXB0 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
MKS1Q9NXB0 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
MKS1Q9NXB0 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC18.86■□□□□ 0.61
MKS1Q9NXB0 AR-207ENST00000612010 3896 ntTSL 5 BASIC18.86■□□□□ 0.61
MKS1Q9NXB0 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC18.86■□□□□ 0.61
MKS1Q9NXB0 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
MKS1Q9NXB0 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
MKS1Q9NXB0 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC18.86■□□□□ 0.61
MKS1Q9NXB0 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC18.86■□□□□ 0.61
MKS1Q9NXB0 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
MKS1Q9NXB0 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
MKS1Q9NXB0 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
MKS1Q9NXB0 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
MKS1Q9NXB0 MIPEPP3-201ENST00000412105 444 ntBASIC18.86■□□□□ 0.61
MKS1Q9NXB0 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC18.86■□□□□ 0.61
MKS1Q9NXB0 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC18.86■□□□□ 0.61
MKS1Q9NXB0 AC091874.3-201ENST00000512672 1195 ntBASIC18.86■□□□□ 0.61
MKS1Q9NXB0 OAS3-207ENST00000551007 998 ntTSL 2 BASIC18.86■□□□□ 0.61
MKS1Q9NXB0 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC18.86■□□□□ 0.61
MKS1Q9NXB0 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC18.86■□□□□ 0.61
MKS1Q9NXB0 AC073111.5-205ENST00000641717 521 ntBASIC18.86■□□□□ 0.61
MKS1Q9NXB0 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
MKS1Q9NXB0 STX6-204ENST00000542060 4809 ntTSL 2 BASIC18.86■□□□□ 0.61
MKS1Q9NXB0 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
MKS1Q9NXB0 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
MKS1Q9NXB0 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC18.86■□□□□ 0.61
MKS1Q9NXB0 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC18.86■□□□□ 0.61
MKS1Q9NXB0 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
MKS1Q9NXB0 AC018470.1-201ENST00000624790 3129 ntBASIC18.86■□□□□ 0.61
MKS1Q9NXB0 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC18.86■□□□□ 0.61
MKS1Q9NXB0 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
MKS1Q9NXB0 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC18.86■□□□□ 0.61
MKS1Q9NXB0 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC18.86■□□□□ 0.61
MKS1Q9NXB0 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
MKS1Q9NXB0 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
MKS1Q9NXB0 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC18.85■□□□□ 0.61
MKS1Q9NXB0 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
MKS1Q9NXB0 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
MKS1Q9NXB0 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC18.85■□□□□ 0.61
MKS1Q9NXB0 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC18.85■□□□□ 0.61
MKS1Q9NXB0 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
MKS1Q9NXB0 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC18.85■□□□□ 0.61
MKS1Q9NXB0 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
MKS1Q9NXB0 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC18.85■□□□□ 0.61
MKS1Q9NXB0 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
MKS1Q9NXB0 SNAI3-AS1-205ENST00000568633 2096 ntBASIC18.85■□□□□ 0.61
MKS1Q9NXB0 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
MKS1Q9NXB0 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms