Protein–RNA interactions for Protein: Q9NQI0

DDX4, Probable ATP-dependent RNA helicase DDX4, humanhuman

Known RBP Predictions only

Length 724 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX4Q9NQI0 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
DDX4Q9NQI0 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
DDX4Q9NQI0 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
DDX4Q9NQI0 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
DDX4Q9NQI0 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC22.59■■□□□ 1.21
DDX4Q9NQI0 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC22.59■■□□□ 1.21
DDX4Q9NQI0 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
DDX4Q9NQI0 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC22.58■■□□□ 1.21
DDX4Q9NQI0 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC22.58■■□□□ 1.21
DDX4Q9NQI0 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
DDX4Q9NQI0 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
DDX4Q9NQI0 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC22.58■■□□□ 1.21
DDX4Q9NQI0 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
DDX4Q9NQI0 AL023284.2-201ENST00000405850 579 ntBASIC22.58■■□□□ 1.21
DDX4Q9NQI0 SPDYE13P-201ENST00000445314 798 ntBASIC22.58■■□□□ 1.21
DDX4Q9NQI0 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC22.58■■□□□ 1.21
DDX4Q9NQI0 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC22.58■■□□□ 1.21
DDX4Q9NQI0 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
DDX4Q9NQI0 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC22.58■■□□□ 1.21
DDX4Q9NQI0 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
DDX4Q9NQI0 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC22.58■■□□□ 1.21
DDX4Q9NQI0 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC22.58■■□□□ 1.21
DDX4Q9NQI0 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.2
DDX4Q9NQI0 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.2
DDX4Q9NQI0 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC22.58■■□□□ 1.2
DDX4Q9NQI0 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
DDX4Q9NQI0 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC22.57■■□□□ 1.2
DDX4Q9NQI0 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
DDX4Q9NQI0 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
DDX4Q9NQI0 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC22.57■■□□□ 1.2
DDX4Q9NQI0 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC22.57■■□□□ 1.2
DDX4Q9NQI0 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC22.57■■□□□ 1.2
DDX4Q9NQI0 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC22.57■■□□□ 1.2
DDX4Q9NQI0 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC22.57■■□□□ 1.2
DDX4Q9NQI0 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
DDX4Q9NQI0 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC22.57■■□□□ 1.2
DDX4Q9NQI0 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC22.57■■□□□ 1.2
DDX4Q9NQI0 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC22.57■■□□□ 1.2
DDX4Q9NQI0 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC22.57■■□□□ 1.2
DDX4Q9NQI0 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC22.57■■□□□ 1.2
DDX4Q9NQI0 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC22.57■■□□□ 1.2
DDX4Q9NQI0 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC22.57■■□□□ 1.2
DDX4Q9NQI0 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC22.57■■□□□ 1.2
DDX4Q9NQI0 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC22.57■■□□□ 1.2
DDX4Q9NQI0 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
DDX4Q9NQI0 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC22.57■■□□□ 1.2
DDX4Q9NQI0 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC22.57■■□□□ 1.2
DDX4Q9NQI0 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC22.57■■□□□ 1.2
DDX4Q9NQI0 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC22.57■■□□□ 1.2
DDX4Q9NQI0 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
DDX4Q9NQI0 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
DDX4Q9NQI0 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC22.57■■□□□ 1.2
DDX4Q9NQI0 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC22.56■■□□□ 1.2
DDX4Q9NQI0 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
DDX4Q9NQI0 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC22.56■■□□□ 1.2
DDX4Q9NQI0 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC22.56■■□□□ 1.2
DDX4Q9NQI0 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
DDX4Q9NQI0 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC22.56■■□□□ 1.2
DDX4Q9NQI0 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC22.56■■□□□ 1.2
DDX4Q9NQI0 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC22.56■■□□□ 1.2
DDX4Q9NQI0 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC22.56■■□□□ 1.2
DDX4Q9NQI0 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC22.56■■□□□ 1.2
DDX4Q9NQI0 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
DDX4Q9NQI0 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
DDX4Q9NQI0 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC22.56■■□□□ 1.2
DDX4Q9NQI0 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
DDX4Q9NQI0 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
DDX4Q9NQI0 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC22.56■■□□□ 1.2
DDX4Q9NQI0 DAP-202ENST00000432074 1048 ntTSL 2 BASIC22.56■■□□□ 1.2
DDX4Q9NQI0 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
DDX4Q9NQI0 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC22.56■■□□□ 1.2
DDX4Q9NQI0 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC22.56■■□□□ 1.2
DDX4Q9NQI0 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
DDX4Q9NQI0 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
DDX4Q9NQI0 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
DDX4Q9NQI0 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC22.56■■□□□ 1.2
DDX4Q9NQI0 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
DDX4Q9NQI0 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
DDX4Q9NQI0 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
DDX4Q9NQI0 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
DDX4Q9NQI0 AC036111.1-201ENST00000533973 1582 ntBASIC22.55■■□□□ 1.2
DDX4Q9NQI0 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
DDX4Q9NQI0 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
DDX4Q9NQI0 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
DDX4Q9NQI0 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
DDX4Q9NQI0 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC22.55■■□□□ 1.2
DDX4Q9NQI0 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC22.55■■□□□ 1.2
DDX4Q9NQI0 LY6E-213ENST00000522528 606 ntTSL 3 BASIC22.55■■□□□ 1.2
DDX4Q9NQI0 AL136038.3-201ENST00000561909 1096 ntBASIC22.55■■□□□ 1.2
DDX4Q9NQI0 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC22.55■■□□□ 1.2
DDX4Q9NQI0 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC22.55■■□□□ 1.2
DDX4Q9NQI0 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
DDX4Q9NQI0 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC22.55■■□□□ 1.2
DDX4Q9NQI0 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC22.55■■□□□ 1.2
DDX4Q9NQI0 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
DDX4Q9NQI0 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
DDX4Q9NQI0 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
DDX4Q9NQI0 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC22.55■■□□□ 1.2
DDX4Q9NQI0 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC22.55■■□□□ 1.2
DDX4Q9NQI0 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC22.54■■□□□ 1.2
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms