Protein–RNA interactions for Protein: Q9HBJ7

USP29, Ubiquitin carboxyl-terminal hydrolase 29, humanhuman

Predictions only

Length 922 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP29Q9HBJ7 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
USP29Q9HBJ7 HLA-A-209ENST00000638375 975 ntBASIC19.7■□□□□ 0.74
USP29Q9HBJ7 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC19.7■□□□□ 0.74
USP29Q9HBJ7 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
USP29Q9HBJ7 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC19.7■□□□□ 0.74
USP29Q9HBJ7 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC19.7■□□□□ 0.74
USP29Q9HBJ7 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
USP29Q9HBJ7 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
USP29Q9HBJ7 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
USP29Q9HBJ7 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
USP29Q9HBJ7 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC19.7■□□□□ 0.74
USP29Q9HBJ7 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
USP29Q9HBJ7 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
USP29Q9HBJ7 UBQLN4P1-201ENST00000461599 1801 ntBASIC19.69■□□□□ 0.74
USP29Q9HBJ7 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
USP29Q9HBJ7 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
USP29Q9HBJ7 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC19.69■□□□□ 0.74
USP29Q9HBJ7 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC19.69■□□□□ 0.74
USP29Q9HBJ7 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
USP29Q9HBJ7 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
USP29Q9HBJ7 FEM1AP3-201ENST00000403722 1741 ntBASIC19.69■□□□□ 0.74
USP29Q9HBJ7 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC19.69■□□□□ 0.74
USP29Q9HBJ7 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
USP29Q9HBJ7 KRASP1-201ENST00000407852 552 ntBASIC19.69■□□□□ 0.74
USP29Q9HBJ7 DHDH-203ENST00000522614 776 ntTSL 5 BASIC19.69■□□□□ 0.74
USP29Q9HBJ7 RPS20-210ENST00000523936 899 ntTSL 2 BASIC19.69■□□□□ 0.74
USP29Q9HBJ7 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC19.69■□□□□ 0.74
USP29Q9HBJ7 C1QL1P1-201ENST00000568105 661 ntBASIC19.69■□□□□ 0.74
USP29Q9HBJ7 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC19.69■□□□□ 0.74
USP29Q9HBJ7 CABP2-204ENST00000636477 941 ntTSL 5 BASIC19.69■□□□□ 0.74
USP29Q9HBJ7 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
USP29Q9HBJ7 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
USP29Q9HBJ7 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC19.69■□□□□ 0.74
USP29Q9HBJ7 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
USP29Q9HBJ7 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
USP29Q9HBJ7 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
USP29Q9HBJ7 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
USP29Q9HBJ7 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
USP29Q9HBJ7 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
USP29Q9HBJ7 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC19.68■□□□□ 0.74
USP29Q9HBJ7 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
USP29Q9HBJ7 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC19.68■□□□□ 0.74
USP29Q9HBJ7 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
USP29Q9HBJ7 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC19.68■□□□□ 0.74
USP29Q9HBJ7 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC19.68■□□□□ 0.74
USP29Q9HBJ7 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
USP29Q9HBJ7 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC19.68■□□□□ 0.74
USP29Q9HBJ7 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC19.68■□□□□ 0.74
USP29Q9HBJ7 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
USP29Q9HBJ7 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
USP29Q9HBJ7 AC211429.1-201ENST00000415277 523 ntBASIC19.68■□□□□ 0.74
USP29Q9HBJ7 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
USP29Q9HBJ7 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC19.68■□□□□ 0.74
USP29Q9HBJ7 BX088651.1-201ENST00000540551 451 ntBASIC19.68■□□□□ 0.74
USP29Q9HBJ7 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC19.68■□□□□ 0.74
USP29Q9HBJ7 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
USP29Q9HBJ7 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
USP29Q9HBJ7 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC19.68■□□□□ 0.74
USP29Q9HBJ7 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
USP29Q9HBJ7 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
USP29Q9HBJ7 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
USP29Q9HBJ7 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
USP29Q9HBJ7 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
USP29Q9HBJ7 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
USP29Q9HBJ7 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
USP29Q9HBJ7 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC19.68■□□□□ 0.74
USP29Q9HBJ7 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
USP29Q9HBJ7 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC19.67■□□□□ 0.74
USP29Q9HBJ7 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
USP29Q9HBJ7 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC19.67■□□□□ 0.74
USP29Q9HBJ7 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
USP29Q9HBJ7 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
USP29Q9HBJ7 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
USP29Q9HBJ7 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
USP29Q9HBJ7 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
USP29Q9HBJ7 USP39-202ENST00000409025 1946 ntTSL 5 BASIC19.67■□□□□ 0.74
USP29Q9HBJ7 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
USP29Q9HBJ7 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
USP29Q9HBJ7 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
USP29Q9HBJ7 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
USP29Q9HBJ7 ECEL1P3-201ENST00000427961 737 ntBASIC19.67■□□□□ 0.74
USP29Q9HBJ7 FAM210CP-201ENST00000445714 574 ntBASIC19.67■□□□□ 0.74
USP29Q9HBJ7 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
USP29Q9HBJ7 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC19.67■□□□□ 0.74
USP29Q9HBJ7 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC19.67■□□□□ 0.74
USP29Q9HBJ7 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC19.67■□□□□ 0.74
USP29Q9HBJ7 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
USP29Q9HBJ7 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
USP29Q9HBJ7 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
USP29Q9HBJ7 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC19.67■□□□□ 0.74
USP29Q9HBJ7 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
USP29Q9HBJ7 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
USP29Q9HBJ7 AC026471.1-201ENST00000564629 3026 ntBASIC19.66■□□□□ 0.74
USP29Q9HBJ7 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
USP29Q9HBJ7 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
USP29Q9HBJ7 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC19.66■□□□□ 0.74
USP29Q9HBJ7 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
USP29Q9HBJ7 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
USP29Q9HBJ7 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
USP29Q9HBJ7 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC19.66■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 45.5 ms