Protein–RNA interactions for Protein: Q96JG6

VPS50, Syndetin, humanhuman

Predictions only

Length 964 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50Q96JG6 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
VPS50Q96JG6 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC18.68■□□□□ 0.58
VPS50Q96JG6 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
VPS50Q96JG6 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
VPS50Q96JG6 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
VPS50Q96JG6 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
VPS50Q96JG6 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC18.68■□□□□ 0.58
VPS50Q96JG6 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC18.68■□□□□ 0.58
VPS50Q96JG6 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC18.68■□□□□ 0.58
VPS50Q96JG6 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC18.68■□□□□ 0.58
VPS50Q96JG6 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
VPS50Q96JG6 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
VPS50Q96JG6 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
VPS50Q96JG6 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
VPS50Q96JG6 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VPS50Q96JG6 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC18.67■□□□□ 0.58
VPS50Q96JG6 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VPS50Q96JG6 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
VPS50Q96JG6 RPS2P55-201ENST00000397318 883 ntBASIC18.67■□□□□ 0.58
VPS50Q96JG6 AL353807.1-201ENST00000427475 662 ntBASIC18.67■□□□□ 0.58
VPS50Q96JG6 AC107956.1-201ENST00000494359 873 ntBASIC18.67■□□□□ 0.58
VPS50Q96JG6 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC18.67■□□□□ 0.58
VPS50Q96JG6 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
VPS50Q96JG6 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
VPS50Q96JG6 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC18.67■□□□□ 0.58
VPS50Q96JG6 AC233702.5-201ENST00000584107 538 ntBASIC18.67■□□□□ 0.58
VPS50Q96JG6 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC18.67■□□□□ 0.58
VPS50Q96JG6 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC18.67■□□□□ 0.58
VPS50Q96JG6 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC18.67■□□□□ 0.58
VPS50Q96JG6 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VPS50Q96JG6 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VPS50Q96JG6 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VPS50Q96JG6 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC18.67■□□□□ 0.58
VPS50Q96JG6 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VPS50Q96JG6 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC18.66■□□□□ 0.58
VPS50Q96JG6 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
VPS50Q96JG6 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
VPS50Q96JG6 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC18.66■□□□□ 0.58
VPS50Q96JG6 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC18.66■□□□□ 0.58
VPS50Q96JG6 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC18.66■□□□□ 0.58
VPS50Q96JG6 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC18.66■□□□□ 0.58
VPS50Q96JG6 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VPS50Q96JG6 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
VPS50Q96JG6 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
VPS50Q96JG6 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
VPS50Q96JG6 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
VPS50Q96JG6 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
VPS50Q96JG6 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
VPS50Q96JG6 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC18.66■□□□□ 0.58
VPS50Q96JG6 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC18.66■□□□□ 0.58
VPS50Q96JG6 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
VPS50Q96JG6 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VPS50Q96JG6 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
VPS50Q96JG6 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VPS50Q96JG6 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VPS50Q96JG6 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
VPS50Q96JG6 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VPS50Q96JG6 CD37-204ENST00000535669 1674 ntTSL 2 BASIC18.66■□□□□ 0.58
VPS50Q96JG6 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
VPS50Q96JG6 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC18.66■□□□□ 0.58
VPS50Q96JG6 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
VPS50Q96JG6 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC18.65■□□□□ 0.58
VPS50Q96JG6 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VPS50Q96JG6 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC18.65■□□□□ 0.58
VPS50Q96JG6 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VPS50Q96JG6 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VPS50Q96JG6 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
VPS50Q96JG6 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VPS50Q96JG6 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
VPS50Q96JG6 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VPS50Q96JG6 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
VPS50Q96JG6 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
VPS50Q96JG6 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC18.65■□□□□ 0.58
VPS50Q96JG6 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC18.65■□□□□ 0.58
VPS50Q96JG6 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VPS50Q96JG6 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
VPS50Q96JG6 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VPS50Q96JG6 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VPS50Q96JG6 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC18.65■□□□□ 0.58
VPS50Q96JG6 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC18.65■□□□□ 0.58
VPS50Q96JG6 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VPS50Q96JG6 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC18.65■□□□□ 0.58
VPS50Q96JG6 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
VPS50Q96JG6 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
VPS50Q96JG6 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
VPS50Q96JG6 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
VPS50Q96JG6 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC18.65■□□□□ 0.58
VPS50Q96JG6 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VPS50Q96JG6 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC18.65■□□□□ 0.58
VPS50Q96JG6 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC18.65■□□□□ 0.58
VPS50Q96JG6 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC18.65■□□□□ 0.58
VPS50Q96JG6 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
VPS50Q96JG6 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC18.64■□□□□ 0.58
VPS50Q96JG6 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.58
VPS50Q96JG6 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC18.64■□□□□ 0.58
VPS50Q96JG6 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.58
VPS50Q96JG6 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC18.64■□□□□ 0.58
VPS50Q96JG6 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VPS50Q96JG6 STK25-204ENST00000405585 1643 ntTSL 2 BASIC18.64■□□□□ 0.57
VPS50Q96JG6 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 68.2 ms