Protein–RNA interactions for Protein: Q92900

UPF1, Regulator of nonsense transcripts 1, humanhuman

Known RBP eCLIP

Length 1,129 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1Q92900 UBA52-202ENST00000442744 2845 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.547e-7■■■■□ 19.8
UPF1Q92900 DBT-202ENST00000370132 10799 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.481e-6■■■■□ 19.8
UPF1Q92900 SART3-201ENST00000228284 4004 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.719e-7■■■■□ 19.8
UPF1Q92900 SART3-204ENST00000546728 3637 ntTSL 1 (best)8.73□□□□□ -1.019e-7■■■■□ 19.8
UPF1Q92900 GATD1-212ENST00000530209 600 ntTSL 420.58■□□□□ 0.891e-13■■■■□ 19.7
UPF1Q92900 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC20.87■□□□□ 0.934e-10■■■■□ 19.7
UPF1Q92900 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC18.09■□□□□ 0.494e-10■■■■□ 19.7
UPF1Q92900 VWA8-201ENST00000281496 3475 ntTSL 1 (best) BASIC13.68□□□□□ -0.228e-7■■■■□ 19.7
UPF1Q92900 VWA8-203ENST00000379310 7147 ntAPPRIS P1 TSL 2 BASIC12.5□□□□□ -0.418e-7■■■■□ 19.7
UPF1Q92900 DGKQ-204ENST00000510286 473 ntTSL 322.23■■□□□ 1.152e-6■■■■□ 19.7
UPF1Q92900 HELLS-203ENST00000371327 4987 ntTSL 23.73□□□□□ -1.812e-6■■■■□ 19.7
UPF1Q92900 ERP29-202ENST00000455836 1333 ntTSL 2 BASIC18.67■□□□□ 0.583e-16■■■■□ 19.7
UPF1Q92900 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC18.36■□□□□ 0.533e-16■■■■□ 19.7
UPF1Q92900 ERP29-201ENST00000261735 1735 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.083e-16■■■■□ 19.7
UPF1Q92900 SLC6A8-209ENST00000476466 470 ntTSL 320.18■□□□□ 0.821e-14■■■■□ 19.7
UPF1Q92900 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.151e-8■■■■□ 19.7
UPF1Q92900 LYSMD1-201ENST00000368908 2479 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.545e-7■■■■□ 19.7
UPF1Q92900 HS6ST1-203ENST00000469019 559 ntTSL 420.33■□□□□ 0.857e-7■■■■□ 19.6
UPF1Q92900 DBF4B-205ENST00000526924 2998 ntTSL 1 (best)11.97□□□□□ -0.491e-6■■■■□ 19.6
UPF1Q92900 IRAK1-208ENST00000444230 1125 ntTSL 525.29■■□□□ 1.644e-9■■■■□ 19.6
UPF1Q92900 IRAK1-202ENST00000369974 3319 ntTSL 1 (best) BASIC15.33■□□□□ 0.054e-9■■■■□ 19.6
UPF1Q92900 IRAK1-203ENST00000369980 3666 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.044e-9■■■■□ 19.6
UPF1Q92900 HS6ST1-201ENST00000259241 3932 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.316e-7■■■■□ 19.6
UPF1Q92900 CENPL-202ENST00000356198 2357 ntTSL 1 (best) BASIC15.42■□□□□ 0.068e-9■■■■□ 19.6
UPF1Q92900 RAB29-202ENST00000367139 3272 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.638e-9■■■■□ 19.6
UPF1Q92900 CENPL-203ENST00000367710 1771 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.698e-9■■■■□ 19.6
UPF1Q92900 CENPL-201ENST00000345664 1847 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.918e-9■■■■□ 19.6
UPF1Q92900 NUB1-212ENST00000568733 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.172e-9■■■■□ 19.6
UPF1Q92900 NUB1-201ENST00000413040 3180 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.22e-9■■■■□ 19.6
UPF1Q92900 SRGAP2-217ENST00000624873 4705 ntAPPRIS ALT1 TSL 1 (best) BASIC11.16□□□□□ -0.629e-7■■■■□ 19.6
UPF1Q92900 SRGAP2-203ENST00000573034 6301 ntAPPRIS P3 TSL 1 (best) BASIC8.68□□□□□ -1.029e-7■■■■□ 19.6
UPF1Q92900 ALDH18A1-202ENST00000371224 3359 ntAPPRIS P3 TSL 1 (best) BASIC11.7□□□□□ -0.541e-8■■■■□ 19.6
UPF1Q92900 ALDH18A1-201ENST00000371221 3337 ntAPPRIS ALT1 TSL 1 (best) BASIC11.36□□□□□ -0.591e-8■■■■□ 19.6
UPF1Q92900 ANKRD11-205ENST00000562194 618 ntTSL 321.95■■□□□ 1.12e-6■■■■□ 19.6
UPF1Q92900 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.568e-8■■■■□ 19.6
UPF1Q92900 CSNK2A2-206ENST00000567730 947 ntTSL 313.99□□□□□ -0.178e-8■■■■□ 19.6
UPF1Q92900 CSNK2A2-205ENST00000566813 1569 ntTSL 513.99□□□□□ -0.178e-8■■■■□ 19.6
UPF1Q92900 CSNK2A2-203ENST00000563307 4978 ntTSL 312.37□□□□□ -0.438e-8■■■■□ 19.6
UPF1Q92900 ZFYVE27-202ENST00000357540 2765 ntTSL 2 BASIC15.09■□□□□ 0.011e-6■■■■□ 19.6
UPF1Q92900 ZFYVE27-204ENST00000370610 2769 ntTSL 2 BASIC15.09■□□□□ 0.011e-6■■■■□ 19.6
UPF1Q92900 ZFYVE27-205ENST00000370613 2669 ntTSL 2 BASIC14.61□□□□□ -0.071e-6■■■■□ 19.6
UPF1Q92900 ZFYVE27-203ENST00000359980 2997 ntAPPRIS ALT1 TSL 2 BASIC13.51□□□□□ -0.251e-6■■■■□ 19.6
UPF1Q92900 ZFYVE27-201ENST00000337540 2927 ntTSL 2 BASIC12.23□□□□□ -0.451e-6■■■■□ 19.6
UPF1Q92900 ZFYVE27-207ENST00000423811 3045 ntAPPRIS P4 TSL 5 BASIC12.15□□□□□ -0.461e-6■■■■□ 19.6
UPF1Q92900 ZFYVE27-206ENST00000393677 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC11.57□□□□□ -0.561e-6■■■■□ 19.6
UPF1Q92900 SLC37A4-201ENST00000330775 2102 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.511e-7■■■■□ 19.6
UPF1Q92900 SLC37A4-218ENST00000638186 2074 ntTSL 517.85■□□□□ 0.451e-7■■■■□ 19.6
UPF1Q92900 SLC37A4-216ENST00000538950 2032 ntTSL 5 BASIC17.01■□□□□ 0.311e-7■■■■□ 19.6
UPF1Q92900 SLC37A4-210ENST00000527992 2040 ntTSL 1 (best)16.54■□□□□ 0.241e-7■■■■□ 19.6
UPF1Q92900 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC15.93■□□□□ 0.141e-7■■■■□ 19.6
UPF1Q92900 SLC37A4-205ENST00000525102 2844 ntTSL 215.87■□□□□ 0.131e-7■■■■□ 19.6
UPF1Q92900 SLC37A4-220ENST00000638925 2046 ntTSL 515.74■□□□□ 0.111e-7■■■■□ 19.6
UPF1Q92900 SLC37A4-213ENST00000532085 5862 ntTSL 1 (best)15.58■□□□□ 0.081e-7■■■■□ 19.6
UPF1Q92900 SLC37A4-202ENST00000357590 2356 ntTSL 5 BASIC14.61□□□□□ -0.071e-7■■■■□ 19.6
UPF1Q92900 SLC37A4-219ENST00000638360 1912 ntTSL 513.73□□□□□ -0.211e-7■■■■□ 19.6
UPF1Q92900 SLC37A4-208ENST00000526275 2626 ntTSL 1 (best)11.47□□□□□ -0.571e-7■■■■□ 19.6
UPF1Q92900 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.622e-6■■■■□ 19.6
UPF1Q92900 SLC25A11-204ENST00000574710 2176 ntTSL 222.55■■□□□ 1.22e-6■■■■□ 19.6
UPF1Q92900 FBXW2-204ENST00000493559 2154 ntTSL 214.76□□□□□ -0.051e-6■■■■□ 19.6
UPF1Q92900 FBXW2-205ENST00000608872 9138 ntAPPRIS P1 TSL 1 (best) BASIC7.3□□□□□ -1.241e-6■■■■□ 19.6
UPF1Q92900 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC20.55■□□□□ 0.886e-8■■■■□ 19.6
UPF1Q92900 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.366e-8■■■■□ 19.6
UPF1Q92900 PITPNB-201ENST00000320996 2826 ntAPPRIS ALT1 TSL 1 (best) BASIC16.43■□□□□ 0.226e-8■■■■□ 19.6
UPF1Q92900 ZCCHC17-208ENST00000618216 1489 ntTSL 3 BASIC21.12■□□□□ 0.974e-6■■■■□ 19.6
UPF1Q92900 ZCCHC17-207ENST00000616859 1458 ntTSL 4 BASIC21.12■□□□□ 0.974e-6■■■■□ 19.6
UPF1Q92900 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC20.8■□□□□ 0.924e-6■■■■□ 19.6
UPF1Q92900 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC20.38■□□□□ 0.854e-6■■■■□ 19.6
UPF1Q92900 ZCCHC17-204ENST00000546109 1705 ntTSL 2 BASIC19.79■□□□□ 0.764e-6■■■■□ 19.6
UPF1Q92900 ZCCHC17-201ENST00000344147 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.564e-6■■■■□ 19.6
UPF1Q92900 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.244e-6■■■■□ 19.6
UPF1Q92900 ZCCHC17-209ENST00000627541 1158 ntTSL 5 BASIC11.13□□□□□ -0.634e-6■■■■□ 19.6
UPF1Q92900 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.752e-8■■■■□ 19.6
UPF1Q92900 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC15.46■□□□□ 0.072e-8■■■■□ 19.6
UPF1Q92900 HCG11-201ENST00000411553 5696 ntBASIC18.31■□□□□ 0.525e-7■■■■□ 19.6
UPF1Q92900 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.567e-7■■■■□ 19.6
UPF1Q92900 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC18.05■□□□□ 0.487e-7■■■■□ 19.6
UPF1Q92900 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC26.22■■□□□ 1.791e-11■■■■□ 19.6
UPF1Q92900 HILPDA-201ENST00000257696 1349 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.121e-11■■■■□ 19.6
UPF1Q92900 HILPDA-204ENST00000481454 1370 ntTSL 221.53■■□□□ 1.041e-11■■■■□ 19.6
UPF1Q92900 HILPDA-203ENST00000466473 904 ntTSL 521.1■□□□□ 0.971e-11■■■■□ 19.6
UPF1Q92900 AC010655.2-201ENST00000493710 662 ntTSL 3 BASIC10.94□□□□□ -0.661e-11■■■■□ 19.6
UPF1Q92900 ANGPT1-201ENST00000297450 4353 ntAPPRIS ALT1 TSL 1 (best)5.25□□□□□ -1.571e-8■■■■□ 19.6
UPF1Q92900 ANGPT1-202ENST00000517746 4322 ntAPPRIS P3 TSL 1 (best)4.13□□□□□ -1.751e-8■■■■□ 19.6
UPF1Q92900 MXRA8-208ENST00000476718 1001 ntTSL 321.08■□□□□ 0.972e-8■■■■□ 19.5
UPF1Q92900 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC25.97■■□□□ 1.758e-9■■■■□ 19.5
UPF1Q92900 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.624e-7■■■■□ 19.5
UPF1Q92900 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.962e-7■■■■□ 19.5
UPF1Q92900 CXCL16-205ENST00000576153 1484 ntTSL 212.35□□□□□ -0.432e-7■■■■□ 19.5
UPF1Q92900 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC19.17■□□□□ 0.663e-6■■■■□ 19.5
UPF1Q92900 APAF1-211ENST00000552268 1143 ntTSL 1 (best) BASIC11.26□□□□□ -0.613e-6■■■■□ 19.5
UPF1Q92900 APAF1-208ENST00000549007 3492 ntTSL 1 (best) BASIC6.73□□□□□ -1.333e-6■■■■□ 19.5
UPF1Q92900 APAF1-205ENST00000547045 3744 ntAPPRIS ALT1 TSL 1 (best) BASIC6.42□□□□□ -1.383e-6■■■■□ 19.5
UPF1Q92900 ATF6B-216ENST00000494022 320 ntTSL 218.2■□□□□ 0.52e-8■■■■□ 19.5
UPF1Q92900 ATF6B-209ENST00000375201 2624 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.172e-8■■■■□ 19.5
UPF1Q92900 ATF6B-210ENST00000375203 2620 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.22e-8■■■■□ 19.5
UPF1Q92900 SCARB2-215ENST00000639145 4471 ntAPPRIS ALT1 TSL 5 BASIC14.29□□□□□ -0.126e-7■■■■□ 19.5
UPF1Q92900 TMEM259-204ENST00000586285 626 ntTSL 316.67■□□□□ 0.267e-11■■■■□ 19.5
UPF1Q92900 FZD5-201ENST00000295417 6708 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.134e-7■■■■□ 19.5
UPF1Q92900 NDST1-207ENST00000523767 3449 ntTSL 2 BASIC13.45□□□□□ -0.265e-9■■■■□ 19.5
UPF1Q92900 MIEF1-201ENST00000325301 5625 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.437e-8■■■■□ 19.5
Retrieved 100 of 15,879 protein–RNA pairs in 112.9 ms