Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC21.66■■□□□ 1.06
ERCC4Q92889 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
ERCC4Q92889 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC21.66■■□□□ 1.06
ERCC4Q92889 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
ERCC4Q92889 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
ERCC4Q92889 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
ERCC4Q92889 AC090340.1-201ENST00000620778 4980 ntBASIC21.66■■□□□ 1.06
ERCC4Q92889 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
ERCC4Q92889 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC21.65■■□□□ 1.06
ERCC4Q92889 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
ERCC4Q92889 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
ERCC4Q92889 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
ERCC4Q92889 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
ERCC4Q92889 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
ERCC4Q92889 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC21.65■■□□□ 1.06
ERCC4Q92889 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC21.65■■□□□ 1.06
ERCC4Q92889 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
ERCC4Q92889 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC21.65■■□□□ 1.06
ERCC4Q92889 AC097658.1-201ENST00000475555 843 ntBASIC21.65■■□□□ 1.06
ERCC4Q92889 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC21.65■■□□□ 1.06
ERCC4Q92889 AC090192.1-201ENST00000517740 490 ntBASIC21.65■■□□□ 1.06
ERCC4Q92889 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC21.65■■□□□ 1.06
ERCC4Q92889 WIZP1-201ENST00000531444 2299 ntBASIC21.65■■□□□ 1.06
ERCC4Q92889 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC21.65■■□□□ 1.06
ERCC4Q92889 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC21.65■■□□□ 1.06
ERCC4Q92889 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
ERCC4Q92889 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
ERCC4Q92889 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC21.65■■□□□ 1.06
ERCC4Q92889 KRT8P8-201ENST00000434750 1448 ntBASIC21.64■■□□□ 1.06
ERCC4Q92889 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
ERCC4Q92889 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC21.64■■□□□ 1.06
ERCC4Q92889 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
ERCC4Q92889 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC21.64■■□□□ 1.06
ERCC4Q92889 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
ERCC4Q92889 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC21.64■■□□□ 1.05
ERCC4Q92889 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
ERCC4Q92889 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC21.64■■□□□ 1.05
ERCC4Q92889 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
ERCC4Q92889 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
ERCC4Q92889 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC21.64■■□□□ 1.05
ERCC4Q92889 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC21.64■■□□□ 1.05
ERCC4Q92889 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC21.64■■□□□ 1.05
ERCC4Q92889 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
ERCC4Q92889 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC21.64■■□□□ 1.05
ERCC4Q92889 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC21.64■■□□□ 1.05
ERCC4Q92889 HLA-B-256ENST00000639848 1089 ntBASIC21.64■■□□□ 1.05
ERCC4Q92889 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
ERCC4Q92889 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
ERCC4Q92889 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.05
ERCC4Q92889 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.05
ERCC4Q92889 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.05
ERCC4Q92889 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC21.64■■□□□ 1.05
ERCC4Q92889 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.05
ERCC4Q92889 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC21.64■■□□□ 1.05
ERCC4Q92889 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC21.63■■□□□ 1.05
ERCC4Q92889 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
ERCC4Q92889 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC21.63■■□□□ 1.05
ERCC4Q92889 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC21.63■■□□□ 1.05
ERCC4Q92889 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC21.63■■□□□ 1.05
ERCC4Q92889 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
ERCC4Q92889 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC21.63■■□□□ 1.05
ERCC4Q92889 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
ERCC4Q92889 AC005332.8-201ENST00000622750 2735 ntBASIC21.63■■□□□ 1.05
ERCC4Q92889 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
ERCC4Q92889 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
ERCC4Q92889 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC21.63■■□□□ 1.05
ERCC4Q92889 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC21.63■■□□□ 1.05
ERCC4Q92889 MIR4758-201ENST00000577688 71 ntBASIC21.63■■□□□ 1.05
ERCC4Q92889 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
ERCC4Q92889 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
ERCC4Q92889 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
ERCC4Q92889 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
ERCC4Q92889 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC21.63■■□□□ 1.05
ERCC4Q92889 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
ERCC4Q92889 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC21.63■■□□□ 1.05
ERCC4Q92889 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
ERCC4Q92889 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
ERCC4Q92889 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC21.63■■□□□ 1.05
ERCC4Q92889 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC21.62■■□□□ 1.05
ERCC4Q92889 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC21.62■■□□□ 1.05
ERCC4Q92889 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC21.62■■□□□ 1.05
ERCC4Q92889 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC21.62■■□□□ 1.05
ERCC4Q92889 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC21.62■■□□□ 1.05
ERCC4Q92889 YBX1P10-201ENST00000444752 975 ntBASIC21.62■■□□□ 1.05
ERCC4Q92889 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC21.62■■□□□ 1.05
ERCC4Q92889 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
ERCC4Q92889 SOX15-203ENST00000570788 1093 ntBASIC21.62■■□□□ 1.05
ERCC4Q92889 AC120498.8-201ENST00000614275 531 ntBASIC21.62■■□□□ 1.05
ERCC4Q92889 PFKL-212ENST00000628044 129 ntTSL 3 BASIC21.62■■□□□ 1.05
ERCC4Q92889 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
ERCC4Q92889 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC21.62■■□□□ 1.05
ERCC4Q92889 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC21.62■■□□□ 1.05
ERCC4Q92889 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC21.62■■□□□ 1.05
ERCC4Q92889 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
ERCC4Q92889 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
ERCC4Q92889 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
ERCC4Q92889 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
ERCC4Q92889 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
ERCC4Q92889 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC21.61■■□□□ 1.05
ERCC4Q92889 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms