Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
SHROOM3Q8TF72 C2orf69P3-201ENST00000565542 1120 ntBASIC19.52■□□□□ 0.71
SHROOM3Q8TF72 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC19.52■□□□□ 0.71
SHROOM3Q8TF72 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
SHROOM3Q8TF72 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SHROOM3Q8TF72 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
SHROOM3Q8TF72 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SHROOM3Q8TF72 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
SHROOM3Q8TF72 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
SHROOM3Q8TF72 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
SHROOM3Q8TF72 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SHROOM3Q8TF72 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC19.51■□□□□ 0.71
SHROOM3Q8TF72 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SHROOM3Q8TF72 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC19.51■□□□□ 0.71
SHROOM3Q8TF72 AC233702.5-201ENST00000584107 538 ntBASIC19.51■□□□□ 0.71
SHROOM3Q8TF72 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC19.51■□□□□ 0.71
SHROOM3Q8TF72 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
SHROOM3Q8TF72 AC097493.4-201ENST00000641197 219 ntBASIC19.51■□□□□ 0.71
SHROOM3Q8TF72 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
SHROOM3Q8TF72 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
SHROOM3Q8TF72 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
SHROOM3Q8TF72 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC19.51■□□□□ 0.71
SHROOM3Q8TF72 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
SHROOM3Q8TF72 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC19.51■□□□□ 0.71
SHROOM3Q8TF72 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC19.51■□□□□ 0.71
SHROOM3Q8TF72 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC19.5■□□□□ 0.71
SHROOM3Q8TF72 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SHROOM3Q8TF72 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
SHROOM3Q8TF72 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SHROOM3Q8TF72 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SHROOM3Q8TF72 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
SHROOM3Q8TF72 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
SHROOM3Q8TF72 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC19.5■□□□□ 0.71
SHROOM3Q8TF72 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC19.5■□□□□ 0.71
SHROOM3Q8TF72 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SHROOM3Q8TF72 IRX1P1-201ENST00000438849 1838 ntBASIC19.5■□□□□ 0.71
SHROOM3Q8TF72 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC19.5■□□□□ 0.71
SHROOM3Q8TF72 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC19.5■□□□□ 0.71
SHROOM3Q8TF72 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SHROOM3Q8TF72 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
SHROOM3Q8TF72 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
SHROOM3Q8TF72 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC19.5■□□□□ 0.71
SHROOM3Q8TF72 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
SHROOM3Q8TF72 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC19.5■□□□□ 0.71
SHROOM3Q8TF72 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SHROOM3Q8TF72 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
SHROOM3Q8TF72 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SHROOM3Q8TF72 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC19.5■□□□□ 0.71
SHROOM3Q8TF72 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC19.5■□□□□ 0.71
SHROOM3Q8TF72 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC19.5■□□□□ 0.71
SHROOM3Q8TF72 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC19.5■□□□□ 0.71
SHROOM3Q8TF72 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SHROOM3Q8TF72 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
SHROOM3Q8TF72 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC19.5■□□□□ 0.71
SHROOM3Q8TF72 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
SHROOM3Q8TF72 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
SHROOM3Q8TF72 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC19.49■□□□□ 0.71
SHROOM3Q8TF72 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SHROOM3Q8TF72 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
SHROOM3Q8TF72 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC19.49■□□□□ 0.71
SHROOM3Q8TF72 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SHROOM3Q8TF72 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC19.49■□□□□ 0.71
SHROOM3Q8TF72 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC19.49■□□□□ 0.71
SHROOM3Q8TF72 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SHROOM3Q8TF72 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
SHROOM3Q8TF72 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
SHROOM3Q8TF72 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
SHROOM3Q8TF72 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC19.49■□□□□ 0.71
SHROOM3Q8TF72 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC19.49■□□□□ 0.71
SHROOM3Q8TF72 SAPCD2P4-201ENST00000424595 1171 ntBASIC19.49■□□□□ 0.71
SHROOM3Q8TF72 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SHROOM3Q8TF72 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC19.49■□□□□ 0.71
SHROOM3Q8TF72 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
SHROOM3Q8TF72 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SHROOM3Q8TF72 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC19.49■□□□□ 0.71
SHROOM3Q8TF72 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SHROOM3Q8TF72 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
SHROOM3Q8TF72 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
SHROOM3Q8TF72 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC19.49■□□□□ 0.71
SHROOM3Q8TF72 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SHROOM3Q8TF72 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
SHROOM3Q8TF72 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SHROOM3Q8TF72 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC19.48■□□□□ 0.71
SHROOM3Q8TF72 ARMC10P1-201ENST00000313754 855 ntBASIC19.48■□□□□ 0.71
SHROOM3Q8TF72 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SHROOM3Q8TF72 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC19.48■□□□□ 0.71
SHROOM3Q8TF72 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SHROOM3Q8TF72 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SHROOM3Q8TF72 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC19.48■□□□□ 0.71
SHROOM3Q8TF72 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SHROOM3Q8TF72 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SHROOM3Q8TF72 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SHROOM3Q8TF72 AC018445.3-201ENST00000624177 1945 ntBASIC19.48■□□□□ 0.71
SHROOM3Q8TF72 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC19.48■□□□□ 0.71
SHROOM3Q8TF72 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SHROOM3Q8TF72 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SHROOM3Q8TF72 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SHROOM3Q8TF72 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC19.48■□□□□ 0.71
SHROOM3Q8TF72 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
SHROOM3Q8TF72 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 38 ms