Protein–RNA interactions for Protein: Q8N684

CPSF7, Cleavage and polyadenylation specificity factor subunit 7, humanhuman

Known RBP Predictions only

Length 471 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF7Q8N684 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CPSF7Q8N684 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CPSF7Q8N684 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC18.68■□□□□ 0.58
CPSF7Q8N684 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC18.68■□□□□ 0.58
CPSF7Q8N684 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
CPSF7Q8N684 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
CPSF7Q8N684 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
CPSF7Q8N684 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CPSF7Q8N684 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CPSF7Q8N684 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CPSF7Q8N684 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC18.67■□□□□ 0.58
CPSF7Q8N684 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CPSF7Q8N684 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CPSF7Q8N684 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC18.67■□□□□ 0.58
CPSF7Q8N684 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CPSF7Q8N684 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC18.67■□□□□ 0.58
CPSF7Q8N684 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CPSF7Q8N684 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CPSF7Q8N684 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
CPSF7Q8N684 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
CPSF7Q8N684 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
CPSF7Q8N684 RPS2P52-201ENST00000469610 820 ntBASIC18.67■□□□□ 0.58
CPSF7Q8N684 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC18.67■□□□□ 0.58
CPSF7Q8N684 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC18.67■□□□□ 0.58
CPSF7Q8N684 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CPSF7Q8N684 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
CPSF7Q8N684 TFP1-202ENST00000475455 1573 ntBASIC18.67■□□□□ 0.58
CPSF7Q8N684 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC18.67■□□□□ 0.58
CPSF7Q8N684 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CPSF7Q8N684 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CPSF7Q8N684 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CPSF7Q8N684 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC18.66■□□□□ 0.58
CPSF7Q8N684 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC18.66■□□□□ 0.58
CPSF7Q8N684 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC18.66■□□□□ 0.58
CPSF7Q8N684 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CPSF7Q8N684 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC18.66■□□□□ 0.58
CPSF7Q8N684 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC18.66■□□□□ 0.58
CPSF7Q8N684 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
CPSF7Q8N684 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC18.66■□□□□ 0.58
CPSF7Q8N684 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
CPSF7Q8N684 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC18.66■□□□□ 0.58
CPSF7Q8N684 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CPSF7Q8N684 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CPSF7Q8N684 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CPSF7Q8N684 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
CPSF7Q8N684 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC18.66■□□□□ 0.58
CPSF7Q8N684 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC18.66■□□□□ 0.58
CPSF7Q8N684 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
CPSF7Q8N684 AC093827.2-201ENST00000512654 315 ntBASIC18.66■□□□□ 0.58
CPSF7Q8N684 PNMA6B-201ENST00000538162 1200 ntBASIC18.66■□□□□ 0.58
CPSF7Q8N684 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
CPSF7Q8N684 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
CPSF7Q8N684 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
CPSF7Q8N684 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC18.66■□□□□ 0.58
CPSF7Q8N684 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC18.66■□□□□ 0.58
CPSF7Q8N684 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC18.66■□□□□ 0.58
CPSF7Q8N684 AC092368.3-202ENST00000574180 1591 ntBASIC18.66■□□□□ 0.58
CPSF7Q8N684 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC18.66■□□□□ 0.58
CPSF7Q8N684 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC18.66■□□□□ 0.58
CPSF7Q8N684 NXN-202ENST00000537628 1340 ntTSL 3 BASIC18.66■□□□□ 0.58
CPSF7Q8N684 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC18.66■□□□□ 0.58
CPSF7Q8N684 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC18.66■□□□□ 0.58
CPSF7Q8N684 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CPSF7Q8N684 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CPSF7Q8N684 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC18.66■□□□□ 0.58
CPSF7Q8N684 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC18.65■□□□□ 0.58
CPSF7Q8N684 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
CPSF7Q8N684 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CPSF7Q8N684 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CPSF7Q8N684 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CPSF7Q8N684 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
CPSF7Q8N684 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CPSF7Q8N684 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
CPSF7Q8N684 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CPSF7Q8N684 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
CPSF7Q8N684 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CPSF7Q8N684 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CPSF7Q8N684 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
CPSF7Q8N684 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC18.65■□□□□ 0.58
CPSF7Q8N684 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CPSF7Q8N684 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CPSF7Q8N684 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC18.65■□□□□ 0.58
CPSF7Q8N684 AC073648.6-201ENST00000641589 218 ntBASIC18.65■□□□□ 0.58
CPSF7Q8N684 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CPSF7Q8N684 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC18.65■□□□□ 0.58
CPSF7Q8N684 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
CPSF7Q8N684 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC18.65■□□□□ 0.58
CPSF7Q8N684 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CPSF7Q8N684 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CPSF7Q8N684 NOC2LP1-202ENST00000452600 2235 ntBASIC18.65■□□□□ 0.58
CPSF7Q8N684 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC18.65■□□□□ 0.58
CPSF7Q8N684 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
CPSF7Q8N684 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
CPSF7Q8N684 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CPSF7Q8N684 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC18.65■□□□□ 0.58
CPSF7Q8N684 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CPSF7Q8N684 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
CPSF7Q8N684 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC18.65■□□□□ 0.58
CPSF7Q8N684 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC18.64■□□□□ 0.58
CPSF7Q8N684 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC18.64■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms