Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC19.8■□□□□ 0.76
NPAS3Q8IXF0 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC19.8■□□□□ 0.76
NPAS3Q8IXF0 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
NPAS3Q8IXF0 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC19.79■□□□□ 0.76
NPAS3Q8IXF0 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
NPAS3Q8IXF0 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC19.79■□□□□ 0.76
NPAS3Q8IXF0 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
NPAS3Q8IXF0 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
NPAS3Q8IXF0 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC19.79■□□□□ 0.76
NPAS3Q8IXF0 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
NPAS3Q8IXF0 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
NPAS3Q8IXF0 TSPY23P-201ENST00000440136 739 ntBASIC19.79■□□□□ 0.76
NPAS3Q8IXF0 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
NPAS3Q8IXF0 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
NPAS3Q8IXF0 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC19.79■□□□□ 0.76
NPAS3Q8IXF0 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
NPAS3Q8IXF0 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
NPAS3Q8IXF0 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
NPAS3Q8IXF0 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
NPAS3Q8IXF0 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
NPAS3Q8IXF0 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
NPAS3Q8IXF0 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
NPAS3Q8IXF0 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
NPAS3Q8IXF0 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
NPAS3Q8IXF0 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC19.78■□□□□ 0.76
NPAS3Q8IXF0 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC19.78■□□□□ 0.76
NPAS3Q8IXF0 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
NPAS3Q8IXF0 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
NPAS3Q8IXF0 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
NPAS3Q8IXF0 LINC01521-201ENST00000504184 1943 ntBASIC19.78■□□□□ 0.76
NPAS3Q8IXF0 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
NPAS3Q8IXF0 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
NPAS3Q8IXF0 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC19.78■□□□□ 0.76
NPAS3Q8IXF0 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
NPAS3Q8IXF0 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
NPAS3Q8IXF0 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
NPAS3Q8IXF0 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
NPAS3Q8IXF0 ATP5G2P1-201ENST00000433580 426 ntBASIC19.78■□□□□ 0.76
NPAS3Q8IXF0 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC19.78■□□□□ 0.76
NPAS3Q8IXF0 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC19.78■□□□□ 0.76
NPAS3Q8IXF0 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC19.78■□□□□ 0.76
NPAS3Q8IXF0 CNP-204ENST00000472031 1019 ntTSL 2 BASIC19.78■□□□□ 0.76
NPAS3Q8IXF0 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC19.78■□□□□ 0.76
NPAS3Q8IXF0 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC19.78■□□□□ 0.76
NPAS3Q8IXF0 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC19.78■□□□□ 0.76
NPAS3Q8IXF0 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC19.78■□□□□ 0.76
NPAS3Q8IXF0 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC19.78■□□□□ 0.76
NPAS3Q8IXF0 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC19.78■□□□□ 0.76
NPAS3Q8IXF0 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC19.78■□□□□ 0.76
NPAS3Q8IXF0 MED17-221ENST00000639724 2317 ntTSL 5 BASIC19.77■□□□□ 0.76
NPAS3Q8IXF0 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
NPAS3Q8IXF0 GABARAPL3-202ENST00000624044 1851 ntBASIC19.77■□□□□ 0.76
NPAS3Q8IXF0 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
NPAS3Q8IXF0 ZNF815P-204ENST00000434898 1737 ntBASIC19.77■□□□□ 0.76
NPAS3Q8IXF0 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
NPAS3Q8IXF0 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
NPAS3Q8IXF0 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
NPAS3Q8IXF0 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
NPAS3Q8IXF0 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC19.77■□□□□ 0.76
NPAS3Q8IXF0 HBZP1-201ENST00000354915 429 ntBASIC19.77■□□□□ 0.76
NPAS3Q8IXF0 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
NPAS3Q8IXF0 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC19.77■□□□□ 0.76
NPAS3Q8IXF0 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC19.77■□□□□ 0.76
NPAS3Q8IXF0 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC19.77■□□□□ 0.76
NPAS3Q8IXF0 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC19.77■□□□□ 0.76
NPAS3Q8IXF0 PP7080-204ENST00000510714 601 ntTSL 3 BASIC19.77■□□□□ 0.76
NPAS3Q8IXF0 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
NPAS3Q8IXF0 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
NPAS3Q8IXF0 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC19.77■□□□□ 0.76
NPAS3Q8IXF0 AC012313.10-201ENST00000623509 926 ntBASIC19.77■□□□□ 0.76
NPAS3Q8IXF0 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
NPAS3Q8IXF0 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
NPAS3Q8IXF0 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
NPAS3Q8IXF0 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.75
NPAS3Q8IXF0 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
NPAS3Q8IXF0 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC19.76■□□□□ 0.75
NPAS3Q8IXF0 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
NPAS3Q8IXF0 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
NPAS3Q8IXF0 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
NPAS3Q8IXF0 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
NPAS3Q8IXF0 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
NPAS3Q8IXF0 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
NPAS3Q8IXF0 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
NPAS3Q8IXF0 AC026396.1-201ENST00000419388 421 ntBASIC19.76■□□□□ 0.75
NPAS3Q8IXF0 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC19.76■□□□□ 0.75
NPAS3Q8IXF0 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC19.76■□□□□ 0.75
NPAS3Q8IXF0 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
NPAS3Q8IXF0 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC19.76■□□□□ 0.75
NPAS3Q8IXF0 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
NPAS3Q8IXF0 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
NPAS3Q8IXF0 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
NPAS3Q8IXF0 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
NPAS3Q8IXF0 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC19.76■□□□□ 0.75
NPAS3Q8IXF0 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC19.76■□□□□ 0.75
NPAS3Q8IXF0 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
NPAS3Q8IXF0 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
NPAS3Q8IXF0 AC073130.3-201ENST00000624389 2278 ntBASIC19.76■□□□□ 0.75
NPAS3Q8IXF0 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
NPAS3Q8IXF0 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
NPAS3Q8IXF0 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms