Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
CCDC28AQ8IWP9 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CCDC28AQ8IWP9 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CCDC28AQ8IWP9 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
CCDC28AQ8IWP9 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CCDC28AQ8IWP9 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC15.97■□□□□ 0.15
CCDC28AQ8IWP9 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
CCDC28AQ8IWP9 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CCDC28AQ8IWP9 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC15.97■□□□□ 0.15
CCDC28AQ8IWP9 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CCDC28AQ8IWP9 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CCDC28AQ8IWP9 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CCDC28AQ8IWP9 OR2I1P-207ENST00000453522 948 ntBASIC15.97■□□□□ 0.15
CCDC28AQ8IWP9 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC15.97■□□□□ 0.15
CCDC28AQ8IWP9 TRIR-202ENST00000588213 841 ntTSL 3 BASIC15.97■□□□□ 0.15
CCDC28AQ8IWP9 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC15.97■□□□□ 0.15
CCDC28AQ8IWP9 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC15.97■□□□□ 0.15
CCDC28AQ8IWP9 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
CCDC28AQ8IWP9 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC15.97■□□□□ 0.15
CCDC28AQ8IWP9 AC006333.2-201ENST00000607957 2099 ntBASIC15.97■□□□□ 0.15
CCDC28AQ8IWP9 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC15.97■□□□□ 0.15
CCDC28AQ8IWP9 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CCDC28AQ8IWP9 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
CCDC28AQ8IWP9 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
CCDC28AQ8IWP9 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
CCDC28AQ8IWP9 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC15.97■□□□□ 0.15
CCDC28AQ8IWP9 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC15.97■□□□□ 0.15
CCDC28AQ8IWP9 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
CCDC28AQ8IWP9 GNAS-203ENST00000306120 1878 ntBASIC15.97■□□□□ 0.15
CCDC28AQ8IWP9 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CCDC28AQ8IWP9 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
CCDC28AQ8IWP9 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CCDC28AQ8IWP9 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CCDC28AQ8IWP9 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
CCDC28AQ8IWP9 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC15.97■□□□□ 0.15
CCDC28AQ8IWP9 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC15.97■□□□□ 0.15
CCDC28AQ8IWP9 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC15.96■□□□□ 0.15
CCDC28AQ8IWP9 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC15.96■□□□□ 0.15
CCDC28AQ8IWP9 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
CCDC28AQ8IWP9 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC15.96■□□□□ 0.15
CCDC28AQ8IWP9 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC15.96■□□□□ 0.15
CCDC28AQ8IWP9 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CCDC28AQ8IWP9 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC15.96■□□□□ 0.15
CCDC28AQ8IWP9 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CCDC28AQ8IWP9 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CCDC28AQ8IWP9 AC004943.2-201ENST00000563328 4842 ntTSL 3 BASIC15.96■□□□□ 0.15
CCDC28AQ8IWP9 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CCDC28AQ8IWP9 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC15.96■□□□□ 0.15
CCDC28AQ8IWP9 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC15.96■□□□□ 0.15
CCDC28AQ8IWP9 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC15.96■□□□□ 0.15
CCDC28AQ8IWP9 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
CCDC28AQ8IWP9 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC15.96■□□□□ 0.15
CCDC28AQ8IWP9 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
CCDC28AQ8IWP9 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC15.96■□□□□ 0.15
CCDC28AQ8IWP9 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC15.96■□□□□ 0.15
CCDC28AQ8IWP9 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
CCDC28AQ8IWP9 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CCDC28AQ8IWP9 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CCDC28AQ8IWP9 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC15.96■□□□□ 0.15
CCDC28AQ8IWP9 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC15.96■□□□□ 0.15
CCDC28AQ8IWP9 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC15.96■□□□□ 0.14
CCDC28AQ8IWP9 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC15.96■□□□□ 0.14
CCDC28AQ8IWP9 MADD-208ENST00000405573 1823 ntTSL 5 BASIC15.96■□□□□ 0.14
CCDC28AQ8IWP9 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC15.96■□□□□ 0.14
CCDC28AQ8IWP9 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC15.96■□□□□ 0.14
CCDC28AQ8IWP9 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC15.96■□□□□ 0.14
CCDC28AQ8IWP9 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
CCDC28AQ8IWP9 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
CCDC28AQ8IWP9 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
CCDC28AQ8IWP9 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
CCDC28AQ8IWP9 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
CCDC28AQ8IWP9 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
CCDC28AQ8IWP9 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
CCDC28AQ8IWP9 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC15.95■□□□□ 0.14
CCDC28AQ8IWP9 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
CCDC28AQ8IWP9 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
CCDC28AQ8IWP9 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC15.95■□□□□ 0.14
CCDC28AQ8IWP9 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
CCDC28AQ8IWP9 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
CCDC28AQ8IWP9 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
CCDC28AQ8IWP9 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC15.95■□□□□ 0.14
CCDC28AQ8IWP9 ITPKB-201ENST00000272117 5822 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
CCDC28AQ8IWP9 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC15.95■□□□□ 0.14
CCDC28AQ8IWP9 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC15.95■□□□□ 0.14
CCDC28AQ8IWP9 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC15.95■□□□□ 0.14
CCDC28AQ8IWP9 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC15.95■□□□□ 0.14
CCDC28AQ8IWP9 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
CCDC28AQ8IWP9 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC15.95■□□□□ 0.14
CCDC28AQ8IWP9 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC15.95■□□□□ 0.14
CCDC28AQ8IWP9 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
CCDC28AQ8IWP9 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC15.94■□□□□ 0.14
CCDC28AQ8IWP9 AP006587.3-201ENST00000525742 1516 ntBASIC15.94■□□□□ 0.14
CCDC28AQ8IWP9 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
CCDC28AQ8IWP9 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
CCDC28AQ8IWP9 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
CCDC28AQ8IWP9 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
CCDC28AQ8IWP9 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC15.94■□□□□ 0.14
CCDC28AQ8IWP9 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
CCDC28AQ8IWP9 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC15.94■□□□□ 0.14
CCDC28AQ8IWP9 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC15.94■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms