Protein–RNA interactions for Protein: Q6A162

KRT40, Keratin, type I cytoskeletal 40, humanhuman

Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT40Q6A162 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC22.15■■□□□ 1.14
KRT40Q6A162 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
KRT40Q6A162 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
KRT40Q6A162 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC22.15■■□□□ 1.14
KRT40Q6A162 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
KRT40Q6A162 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC22.14■■□□□ 1.14
KRT40Q6A162 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
KRT40Q6A162 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC22.14■■□□□ 1.14
KRT40Q6A162 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC22.14■■□□□ 1.14
KRT40Q6A162 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
KRT40Q6A162 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
KRT40Q6A162 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC22.14■■□□□ 1.14
KRT40Q6A162 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC22.14■■□□□ 1.14
KRT40Q6A162 HTR7P1-201ENST00000538670 1336 ntBASIC22.14■■□□□ 1.14
KRT40Q6A162 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC22.14■■□□□ 1.13
KRT40Q6A162 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
KRT40Q6A162 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC22.14■■□□□ 1.13
KRT40Q6A162 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC22.14■■□□□ 1.13
KRT40Q6A162 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC22.14■■□□□ 1.13
KRT40Q6A162 AC113410.3-201ENST00000623366 203 ntBASIC22.14■■□□□ 1.13
KRT40Q6A162 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
KRT40Q6A162 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
KRT40Q6A162 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC22.14■■□□□ 1.13
KRT40Q6A162 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC22.14■■□□□ 1.13
KRT40Q6A162 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC22.14■■□□□ 1.13
KRT40Q6A162 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
KRT40Q6A162 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
KRT40Q6A162 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC22.14■■□□□ 1.13
KRT40Q6A162 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
KRT40Q6A162 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC22.13■■□□□ 1.13
KRT40Q6A162 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
KRT40Q6A162 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC22.13■■□□□ 1.13
KRT40Q6A162 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC22.13■■□□□ 1.13
KRT40Q6A162 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
KRT40Q6A162 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC22.13■■□□□ 1.13
KRT40Q6A162 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC22.13■■□□□ 1.13
KRT40Q6A162 FP475955.4-201ENST00000623131 1990 ntBASIC22.13■■□□□ 1.13
KRT40Q6A162 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
KRT40Q6A162 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC22.13■■□□□ 1.13
KRT40Q6A162 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC22.13■■□□□ 1.13
KRT40Q6A162 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC22.13■■□□□ 1.13
KRT40Q6A162 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC22.13■■□□□ 1.13
KRT40Q6A162 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC22.13■■□□□ 1.13
KRT40Q6A162 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC22.13■■□□□ 1.13
KRT40Q6A162 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
KRT40Q6A162 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC22.13■■□□□ 1.13
KRT40Q6A162 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC22.13■■□□□ 1.13
KRT40Q6A162 NT5C-211ENST00000582170 653 ntTSL 3 BASIC22.13■■□□□ 1.13
KRT40Q6A162 MIR4785-201ENST00000585005 73 ntBASIC22.13■■□□□ 1.13
KRT40Q6A162 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
KRT40Q6A162 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC22.13■■□□□ 1.13
KRT40Q6A162 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC22.13■■□□□ 1.13
KRT40Q6A162 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC22.13■■□□□ 1.13
KRT40Q6A162 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
KRT40Q6A162 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC22.13■■□□□ 1.13
KRT40Q6A162 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC22.13■■□□□ 1.13
KRT40Q6A162 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC22.13■■□□□ 1.13
KRT40Q6A162 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
KRT40Q6A162 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC22.13■■□□□ 1.13
KRT40Q6A162 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
KRT40Q6A162 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC22.12■■□□□ 1.13
KRT40Q6A162 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC22.12■■□□□ 1.13
KRT40Q6A162 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC22.12■■□□□ 1.13
KRT40Q6A162 KRT8P41-201ENST00000533985 1514 ntBASIC22.12■■□□□ 1.13
KRT40Q6A162 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC22.12■■□□□ 1.13
KRT40Q6A162 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
KRT40Q6A162 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
KRT40Q6A162 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC22.12■■□□□ 1.13
KRT40Q6A162 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC22.12■■□□□ 1.13
KRT40Q6A162 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
KRT40Q6A162 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
KRT40Q6A162 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC22.12■■□□□ 1.13
KRT40Q6A162 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
KRT40Q6A162 Z85996.1-201ENST00000494644 937 ntBASIC22.12■■□□□ 1.13
KRT40Q6A162 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC22.12■■□□□ 1.13
KRT40Q6A162 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
KRT40Q6A162 AL445675.2-201ENST00000620291 557 ntBASIC22.12■■□□□ 1.13
KRT40Q6A162 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC22.12■■□□□ 1.13
KRT40Q6A162 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC22.12■■□□□ 1.13
KRT40Q6A162 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
KRT40Q6A162 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC22.12■■□□□ 1.13
KRT40Q6A162 AC004408.2-201ENST00000623613 2777 ntBASIC22.12■■□□□ 1.13
KRT40Q6A162 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC22.12■■□□□ 1.13
KRT40Q6A162 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
KRT40Q6A162 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC22.12■■□□□ 1.13
KRT40Q6A162 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
KRT40Q6A162 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
KRT40Q6A162 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
KRT40Q6A162 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC22.11■■□□□ 1.13
KRT40Q6A162 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC22.11■■□□□ 1.13
KRT40Q6A162 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
KRT40Q6A162 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
KRT40Q6A162 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC22.11■■□□□ 1.13
KRT40Q6A162 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC22.11■■□□□ 1.13
KRT40Q6A162 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
KRT40Q6A162 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
KRT40Q6A162 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC22.11■■□□□ 1.13
KRT40Q6A162 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC22.11■■□□□ 1.13
KRT40Q6A162 NIFKP9-201ENST00000419265 221 ntBASIC22.11■■□□□ 1.13
KRT40Q6A162 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC22.11■■□□□ 1.13
Retrieved 100 of 98,524 protein–RNA pairs in 11.4 ms