Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC18.61■□□□□ 0.57
PCNAP12004 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
PCNAP12004 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PCNAP12004 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PCNAP12004 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC18.61■□□□□ 0.57
PCNAP12004 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PCNAP12004 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC18.61■□□□□ 0.57
PCNAP12004 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC18.61■□□□□ 0.57
PCNAP12004 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
PCNAP12004 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC18.61■□□□□ 0.57
PCNAP12004 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC18.61■□□□□ 0.57
PCNAP12004 ADM-205ENST00000528544 586 ntTSL 2 BASIC18.61■□□□□ 0.57
PCNAP12004 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC18.61■□□□□ 0.57
PCNAP12004 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
PCNAP12004 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
PCNAP12004 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC18.61■□□□□ 0.57
PCNAP12004 AC073648.6-201ENST00000641589 218 ntBASIC18.61■□□□□ 0.57
PCNAP12004 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC18.61■□□□□ 0.57
PCNAP12004 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PCNAP12004 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
PCNAP12004 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
PCNAP12004 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PCNAP12004 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
PCNAP12004 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PCNAP12004 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC18.61■□□□□ 0.57
PCNAP12004 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
PCNAP12004 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PCNAP12004 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
PCNAP12004 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
PCNAP12004 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PCNAP12004 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
PCNAP12004 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC18.6■□□□□ 0.57
PCNAP12004 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC18.6■□□□□ 0.57
PCNAP12004 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
PCNAP12004 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
PCNAP12004 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
PCNAP12004 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC18.6■□□□□ 0.57
PCNAP12004 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
PCNAP12004 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PCNAP12004 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PCNAP12004 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PCNAP12004 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC18.6■□□□□ 0.57
PCNAP12004 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PCNAP12004 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
PCNAP12004 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
PCNAP12004 EML3-217ENST00000531557 2509 ntTSL 5 BASIC18.6■□□□□ 0.57
PCNAP12004 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
PCNAP12004 AC104417.2-201ENST00000562989 1793 ntBASIC18.6■□□□□ 0.57
PCNAP12004 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PCNAP12004 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PCNAP12004 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PCNAP12004 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PCNAP12004 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PCNAP12004 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PCNAP12004 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC18.59■□□□□ 0.57
PCNAP12004 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
PCNAP12004 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC18.59■□□□□ 0.57
PCNAP12004 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC18.59■□□□□ 0.57
PCNAP12004 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PCNAP12004 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PCNAP12004 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
PCNAP12004 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
PCNAP12004 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC18.59■□□□□ 0.57
PCNAP12004 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC18.59■□□□□ 0.57
PCNAP12004 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
PCNAP12004 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC18.59■□□□□ 0.57
PCNAP12004 LY6E-205ENST00000519611 635 ntTSL 3 BASIC18.59■□□□□ 0.57
PCNAP12004 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC18.59■□□□□ 0.57
PCNAP12004 RHOD-202ENST00000532559 538 ntTSL 3 BASIC18.59■□□□□ 0.57
PCNAP12004 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC18.59■□□□□ 0.57
PCNAP12004 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC18.59■□□□□ 0.57
PCNAP12004 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
PCNAP12004 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
PCNAP12004 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC18.59■□□□□ 0.57
PCNAP12004 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC18.59■□□□□ 0.57
PCNAP12004 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC18.59■□□□□ 0.57
PCNAP12004 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PCNAP12004 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
PCNAP12004 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
PCNAP12004 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PCNAP12004 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PCNAP12004 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC18.59■□□□□ 0.57
PCNAP12004 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC18.59■□□□□ 0.57
PCNAP12004 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
PCNAP12004 SDHAP1-207ENST00000440850 2000 ntBASIC18.59■□□□□ 0.57
PCNAP12004 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
PCNAP12004 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
PCNAP12004 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PCNAP12004 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
PCNAP12004 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.57
PCNAP12004 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.57
PCNAP12004 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.57
PCNAP12004 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
PCNAP12004 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
PCNAP12004 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
PCNAP12004 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.57
PCNAP12004 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
PCNAP12004 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
PCNAP12004 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC18.58■□□□□ 0.56
PCNAP12004 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC18.58■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms